A B C D E F G H I J K L M N O P Q R S T U V W _

E

end_time - Variable in class compbio.engine.cluster.drmaa.StatisticManager

energyP - Static variable in class compbio.data.sequence.RNAStructReader

EngineUtil - Class in compbio.engine.client

EngineUtil() - Constructor for class compbio.engine.client.EngineUtil

ensembleFreqP - Static variable in class compbio.data.sequence.RNAStructReader

EnvVariableProcessor - Class in compbio.engine.client

EnvVariableProcessor() - Constructor for class compbio.engine.client.EnvVariableProcessor

equals(Object) - Method in class compbio.data.msa.Category

equals(Object) - Method in class compbio.data.sequence.Alignment

Please note that this implementation does not take the order of sequences into account!

equals(Object) - Method in class compbio.data.sequence.AlignmentMetadata

equals(Object) - Method in class compbio.data.sequence.FastaSequence

equals(Object) - Method in class compbio.data.sequence.Range

equals(Object) - Method in class compbio.data.sequence.RNAStructScoreManager

equals(Object) - Method in class compbio.data.sequence.Score

equals(Object) - Method in class compbio.data.sequence.ScoreManager

equals(Object) - Method in class compbio.data.sequence.ScoreManager.ScoreHolder

equals(Object) - Method in class compbio.engine.client.CommandBuilder

equals(Object) - Method in class compbio.engine.client.CommandBuilder.Parameter

equals(Object) - Method in class compbio.engine.client.RunConfiguration

equals(Object) - Method in class compbio.engine.client.SkeletalExecutable

equals(Object) - Method in class compbio.engine.ClusterJobId

equals(Object) - Method in class compbio.engine.FilePuller

equals(Object) - Method in class compbio.engine.Job

equals(Object) - Method in class compbio.metadata.ChunkHolder

equals(Object) - Method in class compbio.metadata.Limit

equals(Object) - Method in class compbio.metadata.Option

equals(Object) - Method in class compbio.metadata.Parameter

equals(Object) - Method in class compbio.metadata.Preset

equals(Object) - Method in class compbio.metadata.RunnerConfig

equals(Object) - Method in class compbio.metadata.ValueConstrain

equals(Object) - Method in class compbio.stat.collector.JobDirectory

equals(Object) - Method in class compbio.stat.collector.JobStat

equals(Object) - Method in class compbio.stat.servlet.ServiceTestResult

equals(Object) - Method in class compbio.stat.servlet.util.StatCollection

error - Variable in class compbio.engine.client.RunConfiguration

Input option

ERROR - Static variable in class compbio.engine.client.SkeletalExecutable

errorFile - Variable in class compbio.engine.client.SkeletalExecutable

es - Static variable in class compbio.engine.local.ExecutableWrapper

exec - Variable in class compbio.engine.client.ConfExecutable

exec - Variable in class compbio.ws.server.GenericMetadataService

EXEC_STAT_FILE - Static variable in class compbio.runner.msa.ClustalO

EXEC_STAT_FILE - Static variable in class compbio.runner.msa.ClustalW

EXEC_STAT_FILE - Static variable in class compbio.runner.msa.Muscle

ExecProvider() - Constructor for enum compbio.engine.client.Executable.ExecProvider

Executable<T> - Interface in compbio.engine.client

Interface to a native executable.

executable - Variable in class compbio.engine.local.LocalRunner

Executable.ExecProvider - Enum in compbio.engine.client

ExecutableWrapper - Class in compbio.engine.local

ExecutableWrapper(ConfiguredExecutable<?>, String) - Constructor for class compbio.engine.local.ExecutableWrapper

executeJob() - Method in class compbio.engine.cluster.drmaa.ClusterRunner

executeJob() - Method in class compbio.engine.cluster.drmaa.JobRunner

executeJob() - Method in class compbio.engine.local.LocalRunner

executeJob() - Method in interface compbio.engine.SyncExecutor

Execute the job

ExecutionStatCollector - Class in compbio.stat.collector

Class assumptions: 1.

ExecutionStatCollector(String, int) - Constructor for class compbio.stat.collector.ExecutionStatCollector

List subdirectories in the job directory

executor - Variable in class compbio.engine.local.LocalRunner

executor - Variable in class compbio.stat.servlet.StatisticCollector

executor - Variable in class compbio.ws.server.MainManager

exit_status - Variable in class compbio.engine.cluster.drmaa.StatisticManager

A B C D E F G H I J K L M N O P Q R S T U V W _