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Packages that use CommandBuilder | |
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compbio.engine.client | Classes and interfaces representing an input for engines. |
compbio.runner | Utilities commonly used by all runners. |
compbio.runner._impl | |
compbio.runner.msa | Wrappers for native executables for multiple sequence alignment (msa) |
Uses of CommandBuilder in compbio.engine.client |
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Methods in compbio.engine.client that return CommandBuilder | ||
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CommandBuilder<T> |
ConfiguredExecutable.getParameters()
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CommandBuilder<T> |
ConfExecutable.getParameters()
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CommandBuilder<?> |
RunConfiguration.getParameters()
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CommandBuilder<T> |
SkeletalExecutable.getParameters(Executable.ExecProvider provider)
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CommandBuilder<T> |
Executable.getParameters(Executable.ExecProvider provider)
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CommandBuilder<T> |
ConfExecutable.getParameters(Executable.ExecProvider provider)
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static
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CommandBuilder.newCommandBuilder(java.util.List<? extends Option<T>> arguments,
java.lang.String nameValueSeparator)
This produces the same result as getCommands method. |
Methods in compbio.engine.client with parameters of type CommandBuilder | |
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void |
RunConfiguration.setParameters(CommandBuilder<?> parameters)
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Uses of CommandBuilder in compbio.runner |
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Methods in compbio.runner that return CommandBuilder | |
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CommandBuilder<_SkeletalCommandBuilder> |
_SkeletalCommandBuilder.getParameters(Executable.ExecProvider provider)
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Uses of CommandBuilder in compbio.runner._impl |
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Methods in compbio.runner._impl that return CommandBuilder | |
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CommandBuilder<NetNglyc> |
NetNglyc.getParameters(Executable.ExecProvider provider)
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Uses of CommandBuilder in compbio.runner.msa |
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Methods in compbio.runner.msa that return CommandBuilder | |
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CommandBuilder<Tcoffee> |
Tcoffee.getParameters(Executable.ExecProvider provider)
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