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Packages that use PipedExecutable | |
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compbio.engine.client | |
compbio.runner.disorder | |
compbio.runner.msa | Wrappers for native executables for multiple sequence alignment (msa) |
Uses of PipedExecutable in compbio.engine.client |
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Subinterfaces of PipedExecutable in compbio.engine.client | |
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interface |
ConfiguredExecutable<T>
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Classes in compbio.engine.client that implement PipedExecutable | |
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class |
ConfExecutable<T>
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Uses of PipedExecutable in compbio.runner.disorder |
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Classes in compbio.runner.disorder that implement PipedExecutable | |
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class |
Disembl
DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops fold_rem465 sequence_file print 'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out' This version of DisEMBL is 1.4 (latest available for download in Feb 2011) capable of outputting raw values The values of the parameters are hard coded in DisEMBL.py script. |
class |
GlobPlot
./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file' Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file' Hard-coded values are 10 15 74 4 5. |
Uses of PipedExecutable in compbio.runner.msa |
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Classes in compbio.runner.msa that implement PipedExecutable | |
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Mafft
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Probcons
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Tcoffee
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