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Packages that use compbio.engine.client | |
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compbio.engine | |
compbio.engine.client | Classes and interfaces representing an input for engines. |
compbio.engine.cluster.drmaa | An cluster engine classes responsible for execution of Executables on the clusters. |
compbio.engine.conf | Classes commonly used by both engines. |
compbio.engine.local | An local engine classes responsible for execution of Executables on the local computer (the same machine as JVM running these classes). |
compbio.runner | Utilities commonly used by all runners. |
compbio.runner._impl | |
compbio.runner.msa | Wrappers for native executables for multiple sequence alignment (msa) |
compbio.runner.psiblast | |
compbio.ws.server |
Classes in compbio.engine.client used by compbio.engine | |
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ConfiguredExecutable
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Executable
Interface to a native executable. |
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Executable.ExecProvider
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Classes in compbio.engine.client used by compbio.engine.client | |
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CommandBuilder
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ConfExecutable
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ConfiguredExecutable
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Executable
Interface to a native executable. |
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Executable.ExecProvider
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PipedExecutable
This is a marker interface to indicate that the output of the process must be captured. |
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RunConfiguration
Value class for persisting ConfExecutable instances |
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SkeletalExecutable
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Classes in compbio.engine.client used by compbio.engine.cluster.drmaa | |
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ConfiguredExecutable
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Classes in compbio.engine.client used by compbio.engine.conf | |
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Executable
Interface to a native executable. |
Classes in compbio.engine.client used by compbio.engine.local | |
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ConfiguredExecutable
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Classes in compbio.engine.client used by compbio.runner | |
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CommandBuilder
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Executable
Interface to a native executable. |
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Executable.ExecProvider
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RunConfiguration
Value class for persisting ConfExecutable instances |
Classes in compbio.engine.client used by compbio.runner._impl | |
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CommandBuilder
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Executable
Interface to a native executable. |
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Executable.ExecProvider
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RunConfiguration
Value class for persisting ConfExecutable instances |
Classes in compbio.engine.client used by compbio.runner.msa | |
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ClusterNativeSpecExecutable
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CommandBuilder
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Executable
Interface to a native executable. |
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Executable.ExecProvider
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PipedExecutable
This is a marker interface to indicate that the output of the process must be captured. |
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SkeletalExecutable
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Classes in compbio.engine.client used by compbio.runner.psiblast | |
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Executable
Interface to a native executable. |
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SkeletalExecutable
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Classes in compbio.engine.client used by compbio.ws.server | |
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ConfiguredExecutable
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