Methods in compbio.ws.server that throw JobSubmissionException |
String |
ClustalWS.align(List<FastaSequence> sequences)
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String |
_MsaService.align(List<FastaSequence> sequences)
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String |
MuscleWS.align(List<FastaSequence> sequences)
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String |
MafftWS.align(List<FastaSequence> sequences)
|
String |
TcoffeeWS.align(List<FastaSequence> sequences)
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String |
ProbconsWS.align(List<FastaSequence> sequences)
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String |
ClustalOWS.align(List<FastaSequence> sequences)
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static
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WSUtil.align(List<FastaSequence> sequences,
ConfiguredExecutable<T> confExec,
org.apache.log4j.Logger logger,
String callingMethod,
Limit<T> limit)
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String |
AAConWS.analize(List<FastaSequence> sequences)
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String |
SequenceAnnotationService.analize(List<FastaSequence> sequences)
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static
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WSUtil.analize(List<FastaSequence> sequences,
ConfiguredExecutable<T> confExec,
org.apache.log4j.Logger log,
String method,
Limit<T> limit)
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String |
ClustalOWS.customAlign(List<FastaSequence> sequences,
List<Option<ClustalO>> options)
|
String |
ClustalWS.customAlign(List<FastaSequence> sequences,
List<Option<ClustalW>> options)
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String |
MafftWS.customAlign(List<FastaSequence> sequences,
List<Option<Mafft>> options)
|
String |
MuscleWS.customAlign(List<FastaSequence> sequences,
List<Option<Muscle>> options)
|
String |
ProbconsWS.customAlign(List<FastaSequence> sequences,
List<Option<Probcons>> options)
|
String |
_MsaService.customAlign(List<FastaSequence> sequences,
List<Option<T>> options)
|
String |
TcoffeeWS.customAlign(List<FastaSequence> sequences,
List<Option<Tcoffee>> options)
|
String |
DisemblWS.customAnalize(List<FastaSequence> sequences,
List<Option<Disembl>> options)
|
String |
GlobPlotWS.customAnalize(List<FastaSequence> sequences,
List<Option<GlobPlot>> options)
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String |
SequenceAnnotationService.customAnalize(List<FastaSequence> sequences,
List<Option<T>> options)
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String |
ClustalOWS.presetAlign(List<FastaSequence> sequences,
Preset<ClustalO> preset)
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String |
ClustalWS.presetAlign(List<FastaSequence> sequences,
Preset<ClustalW> preset)
|
String |
MafftWS.presetAlign(List<FastaSequence> sequences,
Preset<Mafft> preset)
|
String |
MuscleWS.presetAlign(List<FastaSequence> sequences,
Preset<Muscle> preset)
|
String |
ProbconsWS.presetAlign(List<FastaSequence> sequences,
Preset<Probcons> preset)
|
String |
_MsaService.presetAlign(List<FastaSequence> sequences,
Preset<T> preset)
|
String |
TcoffeeWS.presetAlign(List<FastaSequence> sequences,
Preset<Tcoffee> preset)
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String |
DisemblWS.presetAnalize(List<FastaSequence> sequences,
Preset<Disembl> preset)
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String |
GlobPlotWS.presetAnalize(List<FastaSequence> sequences,
Preset<GlobPlot> preset)
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String |
IUPredWS.presetAnalize(List<FastaSequence> sequences,
Preset<IUPred> preset)
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String |
SequenceAnnotationService.presetAnalize(List<FastaSequence> sequences,
Preset<T> preset)
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static void |
WSUtil.validateAAConInput(List<FastaSequence> sequences)
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static void |
WSUtil.validateFastaInput(List<FastaSequence> sequences)
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