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Packages that use Limit | |
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compbio.data.msa | |
compbio.data.msa.jaxws | |
compbio.engine.client | Classes and interfaces representing an input for engines. |
compbio.metadata | A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project. |
compbio.runner | Utilities commonly used by all runners. |
compbio.runner._impl | |
compbio.runner.msa | Wrappers for native executables for multiple sequence alignment (msa) |
compbio.runner.psiblast | |
compbio.ws.server |
Uses of Limit in compbio.data.msa |
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Methods in compbio.data.msa that return Limit | |
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Limit<T> |
MsaWS.getLimit(java.lang.String presetName)
Get a Limit for a preset. |
Uses of Limit in compbio.data.msa.jaxws |
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Methods in compbio.data.msa.jaxws that return Limit | |
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Limit |
GetLimitResponse.getReturn()
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Methods in compbio.data.msa.jaxws with parameters of type Limit | |
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void |
GetLimitResponse.setReturn(Limit _return)
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Uses of Limit in compbio.engine.client |
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Methods in compbio.engine.client that return Limit | |
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Limit<T> |
Executable.getLimit(java.lang.String presetName)
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Limit<T> |
ConfExecutable.getLimit(java.lang.String presetName)
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Uses of Limit in compbio.metadata |
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Methods in compbio.metadata that return Limit | |
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Limit<T> |
LimitsManager.getDefaultLimit()
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Limit<T> |
LimitsManager.getLimitByName(java.lang.String presetName)
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Methods in compbio.metadata that return types with arguments of type Limit | |
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java.util.List<Limit<T>> |
LimitsManager.getLimits()
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Methods in compbio.metadata with parameters of type Limit | |
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static LimitExceededException |
LimitExceededException.newLimitExceeded(Limit<?> limit,
java.util.List<FastaSequence> seqs)
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Uses of Limit in compbio.runner |
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Methods in compbio.runner that return Limit | |
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Limit<_SkeletalCommandBuilder> |
_SkeletalCommandBuilder.getLimit(java.lang.String presetName)
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Uses of Limit in compbio.runner._impl |
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Methods in compbio.runner._impl that return Limit | |
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Limit<NetNglyc> |
NetNglyc.getLimit(java.lang.String presetName)
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Uses of Limit in compbio.runner.msa |
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Methods in compbio.runner.msa that return Limit | |
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Limit<Tcoffee> |
Tcoffee.getLimit(java.lang.String presetName)
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Limit<ClustalW> |
ClustalW.getLimit(java.lang.String presetName)
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Limit<Probcons> |
Probcons.getLimit(java.lang.String presetName)
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Limit<Muscle> |
Muscle.getLimit(java.lang.String presetName)
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Limit<Mafft> |
Mafft.getLimit(java.lang.String presetName)
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Uses of Limit in compbio.runner.psiblast |
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Methods in compbio.runner.psiblast that return Limit | |
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Limit<PsiBlast> |
PsiBlast.getLimit(java.lang.String presetName)
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Uses of Limit in compbio.ws.server |
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Methods in compbio.ws.server that return Limit | |
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Limit<Tcoffee> |
TcoffeeWS.getLimit(java.lang.String presetName)
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Limit<Probcons> |
ProbconsWS.getLimit(java.lang.String presetName)
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Limit<Muscle> |
MuscleWS.getLimit(java.lang.String presetName)
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Limit<Mafft> |
MafftWS.getLimit(java.lang.String presetName)
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Limit<ClustalW> |
ClustalWS.getLimit(java.lang.String presetName)
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Methods in compbio.ws.server with parameters of type Limit | ||
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static
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WSUtil.align(java.util.List<FastaSequence> sequences,
ConfiguredExecutable<T> confExec,
org.apache.log4j.Logger statLog,
javax.xml.ws.WebServiceContext wsContext,
java.lang.String callingMethod,
Limit<T> limit)
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