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Packages that use Limit | |
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compbio.data.msa | Web Service interfaces for JAva Bioinformatics Analysis Web Services. |
compbio.data.msa.jaxws | |
compbio.engine.client | |
compbio.metadata | A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project. |
compbio.runner | Utilities commonly used by all runners. |
compbio.runner._impl | |
compbio.ws.server |
Uses of Limit in compbio.data.msa |
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Methods in compbio.data.msa that return Limit | |
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Limit<T> |
Metadata.getLimit(String presetName)
Get a Limit for a preset. |
Uses of Limit in compbio.data.msa.jaxws |
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Methods in compbio.data.msa.jaxws that return Limit | |
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Limit |
GetLimitResponse.getReturn()
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Methods in compbio.data.msa.jaxws with parameters of type Limit | |
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void |
GetLimitResponse.setReturn(Limit _return)
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Uses of Limit in compbio.engine.client |
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Methods in compbio.engine.client that return Limit | |
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Limit<T> |
Executable.getLimit(String presetName)
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Limit<T> |
SkeletalExecutable.getLimit(String presetName)
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Limit<T> |
ConfExecutable.getLimit(String presetName)
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Uses of Limit in compbio.metadata |
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Methods in compbio.metadata that return Limit | |
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Limit<T> |
LimitsManager.getDefaultLimit()
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Limit<T> |
LimitsManager.getLimitByName(String presetName)
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Methods in compbio.metadata that return types with arguments of type Limit | |
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List<Limit<T>> |
LimitsManager.getLimits()
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Methods in compbio.metadata with parameters of type Limit | |
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static LimitExceededException |
LimitExceededException.newLimitExceeded(Limit<?> limit,
List<FastaSequence> seqs)
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Uses of Limit in compbio.runner |
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Methods in compbio.runner that return Limit | |
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Limit<_SkeletalCommandBuilder> |
_SkeletalCommandBuilder.getLimit(String presetName)
Deprecated. |
Uses of Limit in compbio.runner._impl |
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Methods in compbio.runner._impl that return Limit | |
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Limit<NetNglyc> |
NetNglyc.getLimit(String presetName)
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Uses of Limit in compbio.ws.server |
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Methods in compbio.ws.server that return Limit | |
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Limit<T> |
GenericMetadataService.getLimit(String presetName)
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Limit<ClustalW> |
ClustalWS.getLimit(String presetName)
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Limit<Muscle> |
MuscleWS.getLimit(String presetName)
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Limit<Mafft> |
MafftWS.getLimit(String presetName)
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Limit<Tcoffee> |
TcoffeeWS.getLimit(String presetName)
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Limit<Probcons> |
ProbconsWS.getLimit(String presetName)
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Limit<ClustalO> |
ClustalOWS.getLimit(String presetName)
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Methods in compbio.ws.server with parameters of type Limit | ||
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static
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WSUtil.align(List<FastaSequence> sequences,
ConfiguredExecutable<T> confExec,
org.apache.log4j.Logger logger,
String callingMethod,
Limit<T> limit)
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static
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WSUtil.analize(List<FastaSequence> sequences,
ConfiguredExecutable<T> confExec,
org.apache.log4j.Logger log,
String method,
Limit<T> limit)
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