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Packages that use Preset | |
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compbio.data.msa | Web Service interfaces for JAva Bioinformatics Analysis Web Services. |
compbio.data.msa.jaxws | |
compbio.metadata | A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project. |
compbio.ws.server |
Uses of Preset in compbio.data.msa |
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Methods in compbio.data.msa with parameters of type Preset | |
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String |
MsaWS.presetAlign(List<FastaSequence> sequences,
Preset<T> preset)
Align a list of sequences with preset. |
String |
SequenceAnnotation.presetAnalize(List<FastaSequence> sequences,
Preset<T> preset)
Analyse the sequences according to the preset settings. |
Uses of Preset in compbio.data.msa.jaxws |
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Methods in compbio.data.msa.jaxws that return Preset | |
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Preset |
PresetAnalize.getPreset()
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Preset |
PresetAlign.getPreset()
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Methods in compbio.data.msa.jaxws with parameters of type Preset | |
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void |
PresetAnalize.setPreset(Preset preset)
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void |
PresetAlign.setPreset(Preset preset)
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Uses of Preset in compbio.metadata |
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Methods in compbio.metadata that return Preset | |
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Preset<T> |
PresetManager.getPresetByName(String presetName)
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Methods in compbio.metadata that return types with arguments of type Preset | |
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List<Preset<T>> |
PresetManager.getPresets()
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Method parameters in compbio.metadata with type arguments of type Preset | |
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void |
PresetManager.setPresets(List<Preset<T>> presets)
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Uses of Preset in compbio.ws.server |
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Methods in compbio.ws.server with parameters of type Preset | |
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String |
ClustalOWS.presetAlign(List<FastaSequence> sequences,
Preset<ClustalO> preset)
|
String |
ClustalWS.presetAlign(List<FastaSequence> sequences,
Preset<ClustalW> preset)
|
String |
MafftWS.presetAlign(List<FastaSequence> sequences,
Preset<Mafft> preset)
|
String |
MuscleWS.presetAlign(List<FastaSequence> sequences,
Preset<Muscle> preset)
|
String |
ProbconsWS.presetAlign(List<FastaSequence> sequences,
Preset<Probcons> preset)
|
String |
_MsaService.presetAlign(List<FastaSequence> sequences,
Preset<T> preset)
|
String |
TcoffeeWS.presetAlign(List<FastaSequence> sequences,
Preset<Tcoffee> preset)
|
String |
DisemblWS.presetAnalize(List<FastaSequence> sequences,
Preset<Disembl> preset)
|
String |
GlobPlotWS.presetAnalize(List<FastaSequence> sequences,
Preset<GlobPlot> preset)
|
String |
IUPredWS.presetAnalize(List<FastaSequence> sequences,
Preset<IUPred> preset)
|
String |
SequenceAnnotationService.presetAnalize(List<FastaSequence> sequences,
Preset<T> preset)
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