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Packages that use RunnerConfig | |
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compbio.data.msa | |
compbio.data.msa.jaxws | |
compbio.engine.client | Classes and interfaces representing an input for engines. |
compbio.metadata | A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project. |
compbio.runner | Utilities commonly used by all runners. |
compbio.ws.server |
Uses of RunnerConfig in compbio.data.msa |
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Methods in compbio.data.msa that return RunnerConfig | |
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RunnerConfig<T> |
MsaWS.getRunnerOptions()
Get options supported by a web service |
Uses of RunnerConfig in compbio.data.msa.jaxws |
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Methods in compbio.data.msa.jaxws that return RunnerConfig | |
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RunnerConfig |
GetRunnerOptionsResponse.getReturn()
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Methods in compbio.data.msa.jaxws with parameters of type RunnerConfig | |
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void |
GetRunnerOptionsResponse.setReturn(RunnerConfig _return)
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Uses of RunnerConfig in compbio.engine.client |
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Methods in compbio.engine.client that return RunnerConfig | ||
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static
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ConfExecutable.getRunnerOptions(java.lang.Class<? extends Executable<V>> clazz)
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Uses of RunnerConfig in compbio.metadata |
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Methods in compbio.metadata that return RunnerConfig | |
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RunnerConfig<T> |
RunnerConfig.copyAndValidateRConfig(RunnerConfig<?> runnerConf)
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Methods in compbio.metadata with parameters of type RunnerConfig | |
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RunnerConfig<T> |
RunnerConfig.copyAndValidateRConfig(RunnerConfig<?> runnerConf)
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java.util.List<Option<T>> |
Preset.getArguments(RunnerConfig<T> rconfig)
Converts list of options as String to type Option |
void |
PresetManager.validate(RunnerConfig<T> options)
Checks whether preset option and parameter are defined in RunnerConfig object. |
Uses of RunnerConfig in compbio.runner |
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Methods in compbio.runner that return RunnerConfig | ||
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static
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Util.getSupportedOptions(java.lang.Class<? extends Executable<T>> clazz)
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Methods in compbio.runner with parameters of type RunnerConfig | |
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static java.util.List<java.lang.String> |
OptionCombinator.argumentsToCommandString(java.util.List<? extends Option<?>> arguments,
RunnerConfig<? extends Executable<?>> rconfig)
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Constructors in compbio.runner with parameters of type RunnerConfig | |
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OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig)
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Uses of RunnerConfig in compbio.ws.server |
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Methods in compbio.ws.server that return RunnerConfig | |
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RunnerConfig<Tcoffee> |
TcoffeeWS.getRunnerOptions()
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RunnerConfig<Probcons> |
ProbconsWS.getRunnerOptions()
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RunnerConfig<Muscle> |
MuscleWS.getRunnerOptions()
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RunnerConfig<Mafft> |
MafftWS.getRunnerOptions()
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RunnerConfig<ClustalW> |
ClustalWS.getRunnerOptions()
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