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java.lang.Object compbio.runner._SkeletalCommandBuilder
@Deprecated public abstract class _SkeletalCommandBuilder
Nested Class Summary |
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Nested classes/interfaces inherited from interface compbio.engine.client.Executable |
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Executable.ExecProvider |
Constructor Summary | |
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_SkeletalCommandBuilder()
Deprecated. |
Method Summary | ||
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_SkeletalCommandBuilder |
addParameter(String parameter)
Deprecated. |
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_SkeletalCommandBuilder |
addParameters(List<String> parameters)
Deprecated. Adds parameter to the list of parameters for a native executable |
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_SkeletalCommandBuilder |
addParameters(String[] parameters)
Deprecated. |
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String |
getClusterJobSettings()
Deprecated. |
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String |
getEmail()
Deprecated. |
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String |
getError()
Deprecated. |
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Limit<_SkeletalCommandBuilder> |
getLimit(String presetName)
Deprecated. |
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LimitsManager<_SkeletalCommandBuilder> |
getLimits()
Deprecated. |
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String |
getName()
Deprecated. |
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String |
getOutput()
Deprecated. |
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CommandBuilder<_SkeletalCommandBuilder> |
getParameters(Executable.ExecProvider provider)
Deprecated. |
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getResults(String directory)
Deprecated. |
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Executable<?> |
loadRunConfiguration(RunConfiguration rconfig)
Deprecated. |
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_SkeletalCommandBuilder |
setEmail(String email)
Deprecated. |
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_SkeletalCommandBuilder |
setName(String name)
Deprecated. |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface compbio.engine.client.Executable |
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getCreatedFiles, getInput |
Constructor Detail |
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public _SkeletalCommandBuilder()
Method Detail |
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public _SkeletalCommandBuilder setEmail(String email)
public _SkeletalCommandBuilder setName(String name)
public String getName()
public String getEmail()
public _SkeletalCommandBuilder addParameters(String[] parameters)
public _SkeletalCommandBuilder addParameters(List<String> parameters)
Executable
addParameters
in interface Executable<_SkeletalCommandBuilder>
public CommandBuilder<_SkeletalCommandBuilder> getParameters(Executable.ExecProvider provider)
getParameters
in interface Executable<_SkeletalCommandBuilder>
public _SkeletalCommandBuilder addParameter(String parameter)
public <V> V getResults(String directory)
getResults
in interface Executable<_SkeletalCommandBuilder>
public Executable<?> loadRunConfiguration(RunConfiguration rconfig)
loadRunConfiguration
in interface Executable<_SkeletalCommandBuilder>
public String getOutput()
getOutput
in interface Executable<_SkeletalCommandBuilder>
public String getError()
getError
in interface Executable<_SkeletalCommandBuilder>
public Limit<_SkeletalCommandBuilder> getLimit(String presetName)
getLimit
in interface Executable<_SkeletalCommandBuilder>
public LimitsManager<_SkeletalCommandBuilder> getLimits()
getLimits
in interface Executable<_SkeletalCommandBuilder>
public String getClusterJobSettings()
getClusterJobSettings
in interface Executable<_SkeletalCommandBuilder>
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