compbio.runner._impl
Class NetNglyc
java.lang.Object
compbio.runner._impl.NetNglyc
- All Implemented Interfaces:
- Executable<NetNglyc>
public class NetNglyc
- extends java.lang.Object
- implements Executable<NetNglyc>
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
NetNglyc
public NetNglyc()
getParameters
public CommandBuilder<NetNglyc> getParameters(Executable.ExecProvider provider)
- Specified by:
getParameters
in interface Executable<NetNglyc>
getTestArgs
public static java.util.List<java.lang.String> getTestArgs()
addParameters
public NetNglyc addParameters(java.util.List<java.lang.String> parameters)
- Description copied from interface:
Executable
- Adds parameter to the list of parameters for a native executable
- Specified by:
addParameters
in interface Executable<NetNglyc>
- Returns:
- this Executable
getTestCommand
public static java.lang.String getTestCommand()
getCommandName
public java.lang.String getCommandName()
getCreatedFiles
public java.util.List<java.lang.String> getCreatedFiles()
- Specified by:
getCreatedFiles
in interface Executable<NetNglyc>
getInput
public java.lang.String getInput()
- Specified by:
getInput
in interface Executable<NetNglyc>
getResults
public <V> V getResults(java.lang.String directory)
- Specified by:
getResults
in interface Executable<NetNglyc>
loadRunConfiguration
public Executable<?> loadRunConfiguration(RunConfiguration rconfig)
- Specified by:
loadRunConfiguration
in interface Executable<NetNglyc>
getOutput
public java.lang.String getOutput()
- Specified by:
getOutput
in interface Executable<NetNglyc>
getError
public java.lang.String getError()
- Specified by:
getError
in interface Executable<NetNglyc>
getLimit
public Limit<NetNglyc> getLimit(java.lang.String presetName)
- Specified by:
getLimit
in interface Executable<NetNglyc>
getLimits
public LimitsManager<NetNglyc> getLimits()
- Specified by:
getLimits
in interface Executable<NetNglyc>