compbio.runner._impl
Class PSIBlast
java.lang.Object
compbio.runner._SkeletalCommandBuilder
compbio.runner._impl.PSIBlast
- All Implemented Interfaces:
- Executable<_SkeletalCommandBuilder>
public class PSIBlast
- extends _SkeletalCommandBuilder
Constructor Summary |
PSIBlast(java.lang.String workDirectory)
|
Methods inherited from class compbio.runner._SkeletalCommandBuilder |
addParameter, addParameters, addParameters, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName |
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
PSIBlast
public PSIBlast(java.lang.String workDirectory)
removeOutput
public boolean removeOutput(java.lang.String outfile)
getCommand
public java.lang.String getCommand(Executable.ExecProvider provider)
getCommandName
public java.lang.String getCommandName()
getCreatedFiles
public java.util.List<java.lang.String> getCreatedFiles()
getInput
public java.lang.String getInput()