compbio.runner._impl
Class PSIBlast
java.lang.Object
compbio.runner._SkeletalCommandBuilder
compbio.runner._impl.PSIBlast
- All Implemented Interfaces:
- Executable<_SkeletalCommandBuilder>
public class PSIBlast
- extends _SkeletalCommandBuilder
Methods inherited from class compbio.runner._SkeletalCommandBuilder |
addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName |
PSIBlast
public PSIBlast(String workDirectory)
removeOutput
public boolean removeOutput(String outfile)
getCommand
public String getCommand(Executable.ExecProvider provider)
getCommandName
public String getCommandName()
getCreatedFiles
public List<String> getCreatedFiles()
getInput
public String getInput()