Uses of Class
compbio.runner._SkeletalCommandBuilder

Packages that use _SkeletalCommandBuilder

compbio.runner	Utilities commonly used by all runners.
compbio.runner._impl

Uses of _SkeletalCommandBuilder in compbio.runner

Methods in compbio.runner that return _SkeletalCommandBuilder

_SkeletalCommandBuilder	_SkeletalCommandBuilder.addParameter(java.lang.String parameter)
_SkeletalCommandBuilder	_SkeletalCommandBuilder.addParameters(java.util.List<java.lang.String> parameters)
_SkeletalCommandBuilder	_SkeletalCommandBuilder.addParameters(java.lang.String[] parameters)
_SkeletalCommandBuilder	_SkeletalCommandBuilder.setEmail(java.lang.String email)
_SkeletalCommandBuilder	_SkeletalCommandBuilder.setName(java.lang.String name)

Methods in compbio.runner that return types with arguments of type _SkeletalCommandBuilder

Limit<_SkeletalCommandBuilder>	_SkeletalCommandBuilder.getLimit(java.lang.String presetName)
LimitsManager<_SkeletalCommandBuilder>	_SkeletalCommandBuilder.getLimits()
CommandBuilder<_SkeletalCommandBuilder>	_SkeletalCommandBuilder.getParameters(Executable.ExecProvider provider)

Uses of _SkeletalCommandBuilder in compbio.runner._impl

Subclasses of _SkeletalCommandBuilder in compbio.runner._impl

class	BlastAll
class	Disembl
class	Mcl
class	OB TODO this needs fixing! Executable does not work
class	PSIBlast
class	Ronn
class	RPSBlast