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Packages that use _SkeletalCommandBuilder | |
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compbio.runner | Utilities commonly used by all runners. |
compbio.runner._impl |
Uses of _SkeletalCommandBuilder in compbio.runner |
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Methods in compbio.runner that return _SkeletalCommandBuilder | |
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_SkeletalCommandBuilder |
_SkeletalCommandBuilder.addParameter(String parameter)
Deprecated. |
_SkeletalCommandBuilder |
_SkeletalCommandBuilder.addParameters(List<String> parameters)
Deprecated. |
_SkeletalCommandBuilder |
_SkeletalCommandBuilder.addParameters(String[] parameters)
Deprecated. |
_SkeletalCommandBuilder |
_SkeletalCommandBuilder.setEmail(String email)
Deprecated. |
_SkeletalCommandBuilder |
_SkeletalCommandBuilder.setName(String name)
Deprecated. |
Methods in compbio.runner that return types with arguments of type _SkeletalCommandBuilder | |
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Limit<_SkeletalCommandBuilder> |
_SkeletalCommandBuilder.getLimit(String presetName)
Deprecated. |
LimitsManager<_SkeletalCommandBuilder> |
_SkeletalCommandBuilder.getLimits()
Deprecated. |
CommandBuilder<_SkeletalCommandBuilder> |
_SkeletalCommandBuilder.getParameters(Executable.ExecProvider provider)
Deprecated. |
Uses of _SkeletalCommandBuilder in compbio.runner._impl |
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Subclasses of _SkeletalCommandBuilder in compbio.runner._impl | |
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class |
BlastAll
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class |
Mcl
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class |
OB
TODO this needs fixing! Executable does not work |
class |
PSIBlast
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class |
Ronn
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class |
RPSBlast
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