compbio.ws.server
Class _MsaService<T>
java.lang.Object
compbio.ws.server.GenericMetadataService
compbio.ws.server._MsaService<T>
- Type Parameters:
T
-
public abstract class _MsaService<T>
- extends GenericMetadataService
TODO to complete after the approach is tested with SequenceAnnotation!
Common methods for all SequenceAnnotation web services
- Since:
- 2.0
- Version:
- 1.0 June 2011
- Author:
- pvtroshin
align
public String align(List<FastaSequence> sequences)
throws JobSubmissionException
- Throws:
JobSubmissionException
presetAlign
public String presetAlign(List<FastaSequence> sequences,
Preset<T> preset)
throws JobSubmissionException,
WrongParameterException
- Throws:
JobSubmissionException
WrongParameterException
customAlign
public String customAlign(List<FastaSequence> sequences,
List<Option<T>> options)
throws JobSubmissionException,
WrongParameterException
- Throws:
JobSubmissionException
WrongParameterException
getResult
public Alignment getResult(String jobId)
throws ResultNotAvailableException
- Throws:
ResultNotAvailableException
pullExecStatistics
public ChunkHolder pullExecStatistics(String jobId,
long position)
- Description copied from class:
GenericMetadataService
- Assume statistics is not supported
- Overrides:
pullExecStatistics
in class GenericMetadataService
- Returns:
- ChunkHolder