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compbio.data.* |
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compbio.data.sequence.ClustalAlignmentUtil | ||
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public static final char |
gapchar |
45 |
compbio.engine.* |
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compbio.engine.client.ConfExecutable<T> | ||
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public static final java.lang.String |
CLUSTER_TASK_ID_PREFIX |
"@" |
compbio.engine.client.EnvVariableProcessor | ||
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public static final java.lang.String |
PATH |
"PATH" |
compbio.engine.client.RunConfiguration | ||
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public static final java.lang.String |
rconfigFile |
"RunnerConfig.xml" |
compbio.engine.cluster.drmaa.ClusterSession | ||
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public static final java.lang.String |
JOBID |
"JOBID" |
compbio.engine.cluster.dundee._QueueConstraints | ||
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public static final int |
FIRST_MEMORY_LIMIT |
14000 |
public static final int |
LONG_TIME_LIMIT |
24 |
public static final int |
MAX_MEMORY_LIMIT |
30000 |
public static final int |
SHORT_TIME_LIMIT |
8 |
compbio.engine.conf._Key | ||
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public static final java.lang.String |
DELIM |
"#" |
compbio.engine.conf.DirectoryManager | ||
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public static final java.lang.String |
DELIM |
"#" |
compbio.engine.local.ExecutableWrapper | ||
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public static final java.lang.String |
PROC_ERR_FILE |
"procError.txt" |
public static final java.lang.String |
PROC_OUT_FILE |
"procOutput.txt" |
compbio.metadata.* |
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compbio.metadata.PresetManager<T> | ||
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public static final java.lang.String |
LOCAL_ENGINE_LIMIT_PRESET |
"# LocalEngineExecutionLimit #" |
compbio.runner.* |
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compbio.runner.Util | ||
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public static final java.lang.String |
SPACE |
" " |
compbio.runner.msa.ClustalW | ||
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public static final java.lang.String |
KEY_VALUE_SEPARATOR |
"=" |
compbio.runner.msa.Mafft | ||
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public static final java.lang.String |
KEY_VALUE_SEPARATOR |
" " |
compbio.runner.msa.Muscle | ||
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public static final java.lang.String |
KEY_VALUE_SEPARATOR |
" " |
compbio.runner.msa.Probcons | ||
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public static final java.lang.String |
KEY_VALUE_SEPARATOR |
" " |
compbio.runner.msa.Tcoffee | ||
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public static final java.lang.String |
KEY_VALUE_SEPARATOR |
"=" |
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