Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
V
W
_
M
Mafft
- Class in
compbio.runner.msa
Mafft()
- Constructor for class compbio.runner.msa.
Mafft
MafftWS
- Class in
compbio.ws.server
MafftWS()
- Constructor for class compbio.ws.server.
MafftWS
main(String[])
- Static method in class compbio.engine.cluster.drmaa.
_DrmaaExample
main(String[])
- Static method in class compbio.engine.cluster.drmaa.
_JobStatus
main(String[])
- Static method in class compbio.pipeline._jpred.
BlastParser
args[0] is assumed to be the name of a Blast output file
main(String[])
- Static method in class compbio.pipeline._jpred.
Pairwise
main(String[])
- Static method in class compbio.runner._impl.
OB
main(String[])
- Static method in class compbio.ws.client.
Jws2Client
Starts command line client, if no parameter are supported print help.
main(String[])
- Static method in class compbio.ws.client.
WSTester
Test JWS2 web services
main(String[])
- Static method in class compbio.ws.server.
SimpleWSPublisher
MAX_MEMORY_LIMIT
- Static variable in class compbio.engine.cluster.dundee.
_QueueConstraints
Mcl
- Class in
compbio.runner._impl
Mcl(String)
- Constructor for class compbio.runner._impl.
Mcl
mergeEnvVariables(Map<String, String>, Map<String, String>)
- Static method in class compbio.engine.client.
Util
MsaWS
<
T
> - Interface in
compbio.data.msa
Multiple Sequence Alignment (MSA) Web Services Interface
Muscle
- Class in
compbio.runner.msa
Muscle()
- Constructor for class compbio.runner.msa.
Muscle
Default options are -clwstrict - write output in clustal format
MuscleWS
- Class in
compbio.ws.server
MuscleWS()
- Constructor for class compbio.ws.server.
MuscleWS
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
V
W
_