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Mafft
- Class in
compbio.runner.msa
Mafft()
- Constructor for class compbio.runner.msa.
Mafft
MafftWS
- Class in
compbio.ws.server
MafftWS()
- Constructor for class compbio.ws.server.
MafftWS
main(String[])
- Static method in class compbio.pipeline._jpred.
BlastBlastComparator
args[0] is assumed to be the name of a Blast output file
main(String[])
- Static method in class compbio.pipeline._jpred.
BlastHmmerComparator
args[0] is assumed to be the name of a Blast output file
main(String[])
- Static method in class compbio.pipeline._jpred.
BlastParser
args[0] is assumed to be the name of a Blast output file
main(String[])
- Static method in class compbio.pipeline._jpred.
JackHmmerHitParser
main(String[])
- Static method in class compbio.pipeline._jpred.
Pairwise
main(String[])
- Static method in class compbio.runner._impl.
OB
main(String[])
- Static method in class compbio.stat.collector.
ExecutionStatCollector
Not in use
main(String[])
- Static method in class compbio.stat.collector.
StatDB
main(String[])
- Static method in class compbio.ws.client.
AAConClient
Starts command line client, if no parameters are supplied prints help.
main(String[])
- Static method in class compbio.ws.client.
Jws2Client
Starts command line client, if no parameter are supported print help.
main(String[])
- Static method in class compbio.ws.client.
WSTester
Test JWS2 web services
main(String[])
- Static method in class compbio.ws.server.
SimpleWSPublisher
Deprecated.
Mcl
- Class in
compbio.runner._impl
Mcl(String)
- Constructor for class compbio.runner._impl.
Mcl
mergeEnvVariables(Map<String, String>, Map<String, String>)
- Static method in class compbio.engine.client.
Util
Metadata
<
T
> - Interface in
compbio.data.msa
MetadataHelper
- Class in
compbio.ws.client
MetadataHelper()
- Constructor for class compbio.ws.client.
MetadataHelper
MsaWS
<
T
> - Interface in
compbio.data.msa
Multiple Sequence Alignment (MSA) Web Services Interface
Muscle
- Class in
compbio.runner.msa
Muscle()
- Constructor for class compbio.runner.msa.
Muscle
Default options are -clwstrict - write output in clustal format
MuscleWS
- Class in
compbio.ws.server
MuscleWS()
- Constructor for class compbio.ws.server.
MuscleWS
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