A B C D E F G H I J K L M N O P R S T U V W _

T

Tcoffee - Class in compbio.runner.msa

Tcoffee() - Constructor for class compbio.runner.msa.Tcoffee

TcoffeeWS - Class in compbio.ws.server

TcoffeeWS() - Constructor for class compbio.ws.server.TcoffeeWS

termSignal() - Method in class compbio.engine.cluster.drmaa.StatisticManager

toCommand(String) - Method in class compbio.metadata.Option

Convert the option to the command string.

toCommand(String) - Method in class compbio.metadata.Parameter

toString() - Method in class compbio.data.sequence.Alignment

toString() - Method in class compbio.data.sequence.FastaSequence

Same as oneLineFasta

toString() - Method in class compbio.engine.client.CommandBuilder

toString() - Method in class compbio.engine.client.ConfExecutable

toString() - Method in class compbio.engine.client.RunConfiguration

toString() - Method in class compbio.engine.client.SkeletalExecutable

toString() - Method in class compbio.engine.cluster.drmaa.StatisticManager

toString() - Method in enum compbio.engine.cluster.dundee._Queue

toString() - Method in class compbio.engine.conf._Key

toString() - Method in class compbio.engine.FilePuller

toString() - Method in class compbio.engine.Job

toString() - Method in class compbio.metadata.ChunkHolder

toString() - Method in class compbio.metadata.Limit

toString() - Method in class compbio.metadata.LimitsManager

toString() - Method in class compbio.metadata.Option

toString() - Method in class compbio.metadata.Parameter

toString() - Method in class compbio.metadata.Preset

toString() - Method in class compbio.metadata.PresetManager

toString() - Method in class compbio.metadata.RunnerConfig

toString() - Method in class compbio.metadata.ValueConstrain

toString() - Method in class compbio.pipeline._jpred.PScore