A B C D E F G H I J K L M N O P R S T U V W _

D

deepClean() - Method in class compbio.engine.cluster.drmaa.JobRunner

deepCleanSequence(String) - Static method in class compbio.data.sequence.SequenceUtil

Removes all special characters and digits as well as whitespace chars from the sequence

deleteAllFiles(String) - Static method in class compbio.engine.Cleaner

deleteFiles(ConfiguredExecutable<?>) - Static method in class compbio.engine.Cleaner

This method returns true if all files specified by List files were successfully removed or there was no files to remove (files list was empty)

DELIM - Static variable in class compbio.engine.conf._Key

DELIM - Static variable in class compbio.engine.conf.DirectoryManager

DIGIT - Static variable in class compbio.data.sequence.SequenceUtil

A digit

DirectoryManager - Class in compbio.engine.conf

DirectoryManager() - Constructor for class compbio.engine.conf.DirectoryManager

disconnect() - Method in class compbio.engine.FilePuller

Disembl - Class in compbio.runner._impl

Disembl(String) - Constructor for class compbio.runner._impl.Disembl