A B C D E F G H I J K L M N O P R S T U V W _

E

Environment - Class in compbio.runner._impl

This is utility class to encapsulate environmental variables like directory paths

EnvVariableProcessor - Class in compbio.engine.client

EnvVariableProcessor() - Constructor for class compbio.engine.client.EnvVariableProcessor

equals(Object) - Method in class compbio.data.sequence.Alignment

Please note that this implementation does not take the order of sequences into account!

equals(Object) - Method in class compbio.data.sequence.AlignmentMetadata

equals(Object) - Method in class compbio.data.sequence.FastaSequence

equals(Object) - Method in class compbio.engine.client.CommandBuilder

equals(Object) - Method in class compbio.engine.client.RunConfiguration

equals(Object) - Method in class compbio.engine.client.SkeletalExecutable

equals(Object) - Method in class compbio.engine.ClusterJobId

equals(Object) - Method in class compbio.engine.conf._Key

equals(Object) - Method in class compbio.engine.FilePuller

equals(Object) - Method in class compbio.engine.Job

equals(Object) - Method in class compbio.metadata.ChunkHolder

equals(Object) - Method in class compbio.metadata.Limit

equals(Object) - Method in class compbio.metadata.Option

equals(Object) - Method in class compbio.metadata.Parameter

equals(Object) - Method in class compbio.metadata.Preset

equals(Object) - Method in class compbio.metadata.RunnerConfig

equals(Object) - Method in class compbio.metadata.ValueConstrain

equals(Object) - Method in class compbio.pipeline._jpred.PScore

Executable<T> - Interface in compbio.engine.client

Interface to a native executable.

Executable.ExecProvider - Enum in compbio.engine.client

ExecutableWrapper - Class in compbio.engine.local

ExecutableWrapper(ConfiguredExecutable<?>, String) - Constructor for class compbio.engine.local.ExecutableWrapper

execute(Runnable) - Method in class compbio.engine.local._TrackingExecutor

executeJob() - Method in class compbio.engine.cluster.drmaa.JobRunner

executeJob() - Method in class compbio.engine.local.LocalRunner

executeJob() - Method in interface compbio.engine.SyncExecutor

Execute the job