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Environment
- Class in
compbio.runner._impl
This is utility class to encapsulate environmental variables like directory paths
EnvVariableProcessor
- Class in
compbio.engine.client
EnvVariableProcessor()
- Constructor for class compbio.engine.client.
EnvVariableProcessor
equals(Object)
- Method in class compbio.data.sequence.
Alignment
Please note that this implementation does not take the order of sequences into account!
equals(Object)
- Method in class compbio.data.sequence.
AlignmentMetadata
equals(Object)
- Method in class compbio.data.sequence.
FastaSequence
equals(Object)
- Method in class compbio.engine.client.
CommandBuilder
equals(Object)
- Method in class compbio.engine.client.
RunConfiguration
equals(Object)
- Method in class compbio.engine.client.
SkeletalExecutable
equals(Object)
- Method in class compbio.engine.
ClusterJobId
equals(Object)
- Method in class compbio.engine.conf.
_Key
equals(Object)
- Method in class compbio.engine.
FilePuller
equals(Object)
- Method in class compbio.engine.
Job
equals(Object)
- Method in class compbio.metadata.
ChunkHolder
equals(Object)
- Method in class compbio.metadata.
Limit
equals(Object)
- Method in class compbio.metadata.
Option
equals(Object)
- Method in class compbio.metadata.
Parameter
equals(Object)
- Method in class compbio.metadata.
Preset
equals(Object)
- Method in class compbio.metadata.
RunnerConfig
equals(Object)
- Method in class compbio.metadata.
ValueConstrain
equals(Object)
- Method in class compbio.pipeline._jpred.
PScore
Executable
<
T
> - Interface in
compbio.engine.client
Interface to a native executable.
Executable.ExecProvider
- Enum in
compbio.engine.client
ExecutableWrapper
- Class in
compbio.engine.local
ExecutableWrapper(ConfiguredExecutable<?>, String)
- Constructor for class compbio.engine.local.
ExecutableWrapper
execute(Runnable)
- Method in class compbio.engine.local.
_TrackingExecutor
executeJob()
- Method in class compbio.engine.cluster.drmaa.
JobRunner
executeJob()
- Method in class compbio.engine.local.
LocalRunner
executeJob()
- Method in interface compbio.engine.
SyncExecutor
Execute the job
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