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initPull()
- Method in class compbio.engine.
FilePuller
IS_CLUSTER_ENGINE_ENABLED
- Static variable in class compbio.engine.
Configurator
IS_LOCAL_ENGINE_ENABLED
- Static variable in class compbio.engine.
Configurator
isAbsolutePath(String)
- Static method in class compbio.engine.client.
PathValidator
Whether a certain path is absolute or not is operation system dependent!
isAmbiguosProtein(String)
- Static method in class compbio.data.sequence.
SequenceUtil
Check whether the sequence confirms to amboguous protein sequence
isDefault()
- Method in class compbio.metadata.
Limit
isExceeded(List<FastaSequence>)
- Method in class compbio.metadata.
Limit
Checks if the number of sequences or their average length in the dataset exceeds limits the values defined by this Limit
isFileCreated()
- Method in class compbio.engine.
FilePuller
isMarked(String, JobStatus)
- Static method in class compbio.engine.client.
Util
isNonAmbNucleotideSequence(String)
- Static method in class compbio.data.sequence.
SequenceUtil
Ambiguous DNA chars : AGTCRYMKSWHBVDN // differs from protein in only one (!) - B char
isNucleotideSequence(FastaSequence)
- Static method in class compbio.data.sequence.
SequenceUtil
isProteinSequence(String)
- Static method in class compbio.data.sequence.
SequenceUtil
isRequired()
- Method in class compbio.metadata.
Option
Flag that indicated that this option must be specified in the command line for an executable to run
isReturn()
- Method in class compbio.data.msa.jaxws.
CancelJobResponse
isShutdown()
- Method in class compbio.engine.local.
_TrackingExecutor
isTerminated()
- Method in class compbio.engine.local.
_TrackingExecutor
isValidClustalFile(InputStream)
- Static method in class compbio.data.sequence.
ClustalAlignmentUtil
isValidDirectory(String)
- Static method in class compbio.engine.client.
PathValidator
isValidExecutable(String)
- Static method in class compbio.engine.client.
PathValidator
isValidJobId(String)
- Static method in class compbio.engine.client.
Util
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