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Hierarchy For All Packages
Package Hierarchies:
compbio.data._structure
,
compbio.data.msa
,
compbio.data.msa.jaxws
,
compbio.data.sequence
,
compbio.engine
,
compbio.engine.client
,
compbio.engine.cluster.drmaa
,
compbio.engine.cluster.dundee
,
compbio.engine.conf
,
compbio.engine.local
,
compbio.metadata
,
compbio.pipeline._jpred
,
compbio.runner
,
compbio.runner._impl
,
compbio.runner._jpred
,
compbio.runner.msa
,
compbio.runner.psiblast
,
compbio.ws.client
,
compbio.ws.server
Class Hierarchy
java.lang.Object
compbio.engine.cluster.drmaa.
_DrmaaExample
compbio.engine.cluster.drmaa.
_JobStatus
compbio.runner._jpred.
_Jpred
compbio.engine.conf.
_Key
compbio.runner.
_NativeSpecHelper
compbio.engine.cluster.dundee.
_QueueConstraints
compbio.runner.
_SkeletalCommandBuilder
(implements compbio.engine.client.
Executable
<T>)
compbio.runner._impl.
BlastAll
compbio.runner._impl.
Disembl
compbio.runner._impl.
Mcl
compbio.runner._impl.
OB
compbio.runner._impl.
PSIBlast
compbio.runner._impl.
Ronn
compbio.runner._impl.
RPSBlast
java.util.concurrent.AbstractExecutorService (implements java.util.concurrent.ExecutorService)
compbio.engine.local.
_TrackingExecutor
java.util.concurrent.ThreadPoolExecutor
compbio.engine.local.
LocalExecutorService
compbio.data.msa.jaxws.
Align
compbio.data.sequence.
Alignment
compbio.data.sequence.
AlignmentMetadata
compbio.data.msa.jaxws.
AlignResponse
compbio.engine.cluster.drmaa.
AsyncJobRunner
(implements compbio.engine.
AsyncExecutor
)
compbio.engine.local.
AsyncLocalRunner
(implements compbio.engine.
AsyncExecutor
)
compbio.runner._impl.
BlastParameters
compbio.pipeline._jpred.
BlastParser
compbio.data.msa.jaxws.
CancelJob
compbio.data.msa.jaxws.
CancelJobResponse
compbio.metadata.
ChunkHolder
compbio.engine.
Cleaner
compbio.data.sequence.
ClustalAlignmentUtil
compbio.ws.server.
ClustalWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.engine.
ClusterJobId
compbio.engine.cluster.drmaa.
ClusterSession
compbio.engine.cluster.drmaa.
ClusterUtil
compbio.engine.client.
CommandBuilder
<T>
compbio.engine.client.
ConfExecutable
<T> (implements compbio.engine.client.
ConfiguredExecutable
<T>)
compbio.engine.
Configurator
compbio.data.msa.jaxws.
CustomAlign
compbio.data.msa.jaxws.
CustomAlignResponse
compbio.engine.conf.
DirectoryManager
compbio.runner._impl.
Environment
compbio.engine.client.
EnvVariableProcessor
compbio.engine.local.
ExecutableWrapper
(implements java.util.concurrent.Callable<V>)
compbio.data.sequence.
FastaSequence
compbio.engine.
FilePuller
(implements java.util.concurrent.Delayed)
compbio.data.msa.jaxws.
GetJobStatus
compbio.data.msa.jaxws.
GetJobStatusResponse
compbio.data.msa.jaxws.
GetLimit
compbio.data.msa.jaxws.
GetLimitResponse
compbio.data.msa.jaxws.
GetLimits
compbio.data.msa.jaxws.
GetLimitsResponse
compbio.data.msa.jaxws.
GetPresets
compbio.data.msa.jaxws.
GetPresetsResponse
compbio.data.msa.jaxws.
GetProgress
compbio.data.msa.jaxws.
GetProgressResponse
compbio.data.msa.jaxws.
GetResult
compbio.data.msa.jaxws.
GetResultResponse
compbio.data.msa.jaxws.
GetRunnerOptions
compbio.data.msa.jaxws.
GetRunnerOptionsResponse
compbio.engine.
Job
compbio.data.msa.jaxws.
JobExecutionExceptionBean
compbio.engine.cluster.drmaa.
JobRunner
(implements compbio.engine.
SyncExecutor
)
compbio.data.msa.jaxws.
JobSubmissionExceptionBean
compbio.pipeline._jpred.
Jpred4
compbio.data._structure.
JpredResult
compbio.ws.client.
Jws2Client
compbio.metadata.
Limit
<T>
compbio.data.msa.jaxws.
LimitExceededExceptionBean
compbio.metadata.
LimitsManager
<T>
compbio.engine.
LoadBalancer
compbio.engine.local.
LocalEngineUtil
compbio.engine.local.
LocalRunner
(implements compbio.engine.
SyncExecutor
)
compbio.ws.server.
MafftWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.ws.server.
MuscleWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.runner._impl.
NetNglyc
(implements compbio.engine.client.
Executable
<T>)
compbio.metadata.
Option
<T> (implements compbio.metadata.
Argument
<T>)
compbio.metadata.
Parameter
<T>
compbio.runner.
OptionCombinator
compbio.pipeline._jpred.
Pairwise
compbio.engine.client.
PathValidator
compbio.metadata.
Preset
<T>
compbio.data.msa.jaxws.
PresetAlign
compbio.data.msa.jaxws.
PresetAlignResponse
compbio.metadata.
PresetManager
<T>
compbio.ws.server.
ProbconsWS
(implements compbio.data.msa.
MsaWS
<T>)
compbio.engine.
ProgressGetter
compbio.engine.conf.
PropertyHelperManager
compbio.pipeline._jpred.
PScore
compbio.engine.
PulledFileCache
compbio.data.msa.jaxws.
PullExecStatistics
compbio.data.msa.jaxws.
PullExecStatisticsResponse
compbio.data.msa.jaxws.
PullFile
compbio.data.msa.jaxws.
PullFileResponse
compbio.data.msa.jaxws.
ResultNotAvailableExceptionBean
compbio.engine.client.
RunConfiguration
compbio.metadata.
RunnerConfig
<T>
compbio.engine.conf.
RunnerConfigMarshaller
<T>
compbio.runner._impl.
Runners
compbio.data.sequence.
SequenceUtil
compbio.ws.server.
SimpleWSPublisher
compbio.engine.client.
SkeletalExecutable
<T> (implements compbio.engine.client.
Executable
<T>)
compbio.runner.msa.
ClustalW
compbio.runner.msa.
Mafft
(implements compbio.engine.client.
PipedExecutable
<T>)
compbio.runner.msa.
Muscle
compbio.runner.msa.
Probcons
(implements compbio.engine.client.
PipedExecutable
<T>)
compbio.runner.psiblast.
PsiBlast
compbio.runner.msa.
Tcoffee
(implements compbio.engine.client.
ClusterNativeSpecExecutable
<T>, compbio.engine.client.
PipedExecutable
<T>)
compbio.engine.cluster.drmaa.
StatisticManager
compbio.engine.local.
StreamGobbler
(implements java.lang.Runnable)
compbio.engine.
SubmissionManager
compbio.ws.server.
TcoffeeWS
(implements compbio.data.msa.
MsaWS
<T>)
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
compbio.metadata.
JobExecutionException
compbio.metadata.
JobSubmissionException
compbio.metadata.
LimitExceededException
compbio.metadata.
UnsupportedRuntimeException
compbio.metadata.
ResultNotAvailableException
compbio.data.sequence.
UnknownFileFormatException
compbio.metadata.
WrongParameterException
compbio.data.msa.jaxws.
UnsupportedRuntimeExceptionBean
compbio.engine.client.
Util
compbio.runner.
Util
compbio.metadata.
ValueConstrain
compbio.data.msa.jaxws.
WrongParameterExceptionBean
compbio.ws.client.
WSTester
compbio.ws.server.
WSUtil
Interface Hierarchy
compbio.metadata.
Argument
<T>
compbio.engine.
AsyncExecutor
compbio.engine.client.
Executable
<T>
compbio.engine.client.
ClusterNativeSpecExecutable
<T>
compbio.engine.client.
ConfiguredExecutable
<T> (also extends compbio.engine.client.
PipedExecutable
<T>)
compbio.engine.client.
PipedExecutable
<T>
compbio.engine.client.
ConfiguredExecutable
<T> (also extends compbio.engine.client.
Executable
<T>)
compbio.data.msa.
MsaWS
<T>
compbio.engine.
SyncExecutor
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
compbio.data.sequence.
Program
compbio.metadata.
JobStatus
compbio.engine.client.
Executable.ExecProvider
compbio.metadata.
ValueConstrain.Type
compbio.engine.cluster.dundee.
_Queue
compbio.ws.client.
Jws2Client.Services
compbio.data._structure.
JpredAnnotation
compbio.data._structure.
JnetAnnotation
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