Class name |
Method name |
Groups |
compbio.engine.client.CommandBuilderTester |
| |
@Test |
|
testOptionsToCommand |
|
|
testSpaceDelimiterExecutable |
|
|
testCommandBuilding |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner._impl.NetNglycTester |
| |
@Test |
|
testBuildCommand |
cluster runner |
|
testGetTestCommand |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.EngineConfiguratorTester |
| |
@Test |
|
testGetAsyncEngine |
|
|
testGetSyncEngine |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.disorder.GlobPlotTester |
| |
@Test |
|
testRunOnCluster |
cluster runner |
|
testPersistance |
runner |
|
testRunOnClusterAsync |
cluster runner |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner |
|
testRunLocally |
runner |
@BeforeClass |
@BeforeMethod |
|
init |
|
@AfterMethod |
@AfterClass |
compbio.stat.collector.ExecutionStatCollectorTester |
| |
@Test |
|
testHasCompleted |
|
|
testHasTimedOut |
|
|
testCollectStat |
|
|
testUpdateStatTester |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.local.AsyncLocalRunnerTester |
| |
@Test |
|
testCancelLocally |
engine |
|
testMultipleCancelLocally |
engine |
|
testAsyncCancelOperation |
engine |
|
testAsyncRetrievOperation |
engine |
|
testSubmitLocally |
engine |
|
testCancelCompletedTaskLocally |
engine |
|
testGetStatus |
engine |
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.msa.MafftTester |
| |
@Test |
|
testExecute |
runner non_windows |
|
testRunOnClusterAsyncCheckStatusShortPoolingTime |
cluster runner non_windows |
|
testPersistance |
runner non_windows |
|
testClusterExecute |
cluster runner non_windows |
|
testSetInputTester |
runner non_windows |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner non_windows |
|
testRunOnClusterAsyncCheckStatusLongPoolingTime |
cluster runner non_windows |
@BeforeClass |
@BeforeMethod |
|
init |
cluster runner non_windows |
@AfterMethod |
@AfterClass |
compbio.data.sequence.ClustalAlignmentUtilTester |
| |
@Test |
|
testReadClustalFile |
|
|
testReadClustalFileLongNames |
|
|
testReadClustalFileShortNames |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.disorder.IUPredTester |
| |
@Test |
|
testRunOnCluster |
cluster runner |
|
testReadResults |
runner |
|
testPersistance |
runner |
|
testRunOnClusterAsync |
cluster runner |
|
testSetParameter |
runner |
|
testConfigurationLoading |
runner |
|
testRunLocally |
runner |
|
testRunLocallyWithParams |
runner |
@BeforeClass |
@BeforeMethod |
|
init |
|
@AfterMethod |
@AfterClass |
compbio.engine.client.PathValidatorTester |
| |
@Test |
|
testIsAbsolutePath |
|
|
testGetClassPath |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.stat.collector.StatDBTester |
| |
@Test |
|
testReadOneMonthData |
|
|
testVerifyJobsCount |
|
|
testReadYearData |
|
|
testGetEarliestRecord |
|
@BeforeClass |
|
init |
|
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.stat.servlet.util.StatCollectionTester |
| |
@Test |
|
testGetStats |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester |
| |
@Test |
|
testSubmit |
engine cluster |
|
testCancel |
engine cluster |
|
testGetJobStatus |
engine cluster |
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.cluster.drmaa.DrmaaClusterEngineTester |
| |
@Test |
|
testSubmit |
engine cluster |
|
testCancel |
engine cluster |
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.conservation.AAConTester |
| |
@Test |
|
testRunOnCluster |
runner |
|
testRunLocallyWithPreset |
runner |
|
testPersistance |
runner |
|
testRunOnClusterAsync |
cluster runner |
|
testRunLocallyOnTwoCpu |
runner |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner |
|
testRunLocally |
runner |
@BeforeClass |
@BeforeMethod |
|
init |
|
@AfterMethod |
@AfterClass |
compbio.runner._impl.RPSBlastTester |
| |
@Test |
|
testBuildCommand |
cluster runner |
|
testGetTestCommand |
|
|
testGetTestArgsCommand |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.PulledFileCacheTester |
| |
@Test |
|
test |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.disorder.DisemblTester |
| |
@Test |
|
testRunOnCluster |
cluster runner |
|
testPersistance |
runner |
|
testRunOnClusterAsync |
cluster runner |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner |
|
testRunLocally |
runner |
@BeforeClass |
@BeforeMethod |
|
init |
|
@AfterMethod |
@AfterClass |
compbio.runner._impl.MclTester |
| |
@Test |
|
testBuildCommand |
cluster runner |
|
testGetTestCommand |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.cluster.dundee._QueueTester |
| |
@Test |
|
testQueue |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.LoadBalancerTester |
| |
@Test |
|
testLoadBalance |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.msa.ProbconsParametersTester |
| |
@Test |
|
testConstrainedParametersMaxValues |
runner non_windows |
|
testConstrainedParametersRandomValues |
runner non_windows |
|
testConstrainedParametersMinValues |
runner non_windows |
|
testArguments |
runner non_windows |
|
testOptions |
runner non_windows |
|
testDefaultParameters |
runner non_windows |
|
testParameters |
runner non_windows |
|
testConfiguration |
|
@BeforeClass |
@BeforeMethod |
|
setup |
runner non_windows |
@AfterMethod |
@AfterClass |
compbio.metadata.RunnerConfigTester |
| |
@Test |
|
testValidateUpperBoundaryConstrainCheck |
|
|
testOptionSetInvalidValue |
|
|
testValidateBoundaryConstrainCheck |
|
|
testValidateValueConstrain |
|
|
testCreateParameterWithValidValueConstrain |
|
|
testValidateLowerBoundaryConstrainCheck |
|
|
testOptionNoDefaultValidate |
|
|
testCreateParameter |
|
|
testOptionToCommand |
|
|
testParameterToCommand |
|
|
testCreateNumParameterWithoutValidValue |
|
|
testValidate |
|
@BeforeClass |
@BeforeMethod |
|
setup |
|
@AfterMethod |
@AfterClass |
compbio.runner.disorder.JronnTester |
| |
@Test |
|
testRunOnCluster |
cluster runner |
|
testPersistance |
runner |
|
testRunOnClusterAsync |
cluster runner |
|
testRunLocallyOnTwoCpu |
runner |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner |
|
testRunLocally |
runner |
@BeforeClass |
@BeforeMethod |
|
init |
|
@AfterMethod |
@AfterClass |
compbio.runner.msa.MafftParametersTester |
| |
@Test |
|
testConstrainedParametersMaxValues |
runner non_windows |
|
testConstrainedParametersRandomValues |
runner non_windows |
|
testConstrainedParametersMinValues |
runner non_windows |
|
testArguments |
runner non_windows |
|
testOptions |
runner non_windows |
|
testDefaultParameters |
runner non_windows |
|
testParameters |
runner non_windows |
|
testPresets |
runner non_windows |
|
testConfiguration |
|
@BeforeClass |
@BeforeMethod |
|
setup |
runner non_windows |
@AfterMethod |
@AfterClass |
compbio.runner._impl.RonnTester |
| |
@Test |
|
testBuildCommand |
cluster runner |
|
testGetTestCommand |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.msa.ProbconsTester |
| |
@Test |
|
testExecute |
runner non_windows |
|
testPersistance |
runner non_windows |
|
testClusterExecute |
cluster runner non_windows |
|
testSetInputTester |
runner non_windows |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner non_windows |
@BeforeClass |
@BeforeMethod |
|
init |
cluster runner non_windows |
@AfterMethod |
@AfterClass |
compbio.engine.conf.PropertyHelperManagerTester |
| |
@Test |
|
testClusterEngineConf |
cluster |
|
validateClustalConfiguration |
|
|
validateTcoffeeConfiguration |
|
|
validateMuscleConfiguration |
|
|
validateMafftConfiguration |
|
@BeforeClass |
|
testLoadResources |
|
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.metadata.OptionCombinatorTester |
| |
@Test |
|
testgetAllParameters |
|
|
testgetAllOptions |
|
@BeforeClass |
@BeforeMethod |
|
setup |
|
@AfterMethod |
@AfterClass |
compbio.engine.FilePullerTester |
| |
@Test |
|
testGet |
|
|
testCache |
engine |
|
testGetDelay |
engine |
|
testPull |
engine |
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.msa.MuscleTester |
| |
@Test |
|
testRunOnCluster |
cluster runner |
|
testPersistance |
runner |
|
testRunOnClusterAsync |
cluster runner |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner |
|
testRunLocally |
runner |
@BeforeClass |
@BeforeMethod |
|
init |
|
@AfterMethod |
@AfterClass |
compbio.runner.msa.TcoffeeTester |
| |
@Test |
|
testExecute |
runner non_windows |
|
testPersistance |
cluster runner non_windows |
|
testNcore |
runner non_windows |
|
testClusterExecute |
cluster runner non_windows |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner non_windows |
@BeforeClass |
@BeforeMethod |
|
init |
cluster runner non_windows |
@AfterMethod |
@AfterClass |
compbio.runner._impl.OBTester |
| |
@Test |
|
testBuildCommand |
cluster runner |
|
testGetTestCommand |
|
|
testGetTestArgsCommand |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.msa.LimitTester |
| |
@Test |
|
testLimitExceeded |
|
|
testLoadLimits |
|
@BeforeClass |
@BeforeMethod |
|
setup |
runner |
@AfterMethod |
@AfterClass |
compbio.engine.local.LocalRunnerTester |
| |
@Test |
|
testCancelLocally |
engine |
|
testMultipleCancelLocally |
engine |
|
testCancelCompletedTaskLocally |
engine |
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner._impl.Tmhmm2Tester |
| |
@Test |
|
testBuildCommand |
cluster runner |
|
testGetTestCommand |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.msa.MuscleParametersTester |
| |
@Test |
|
testConstrainedParametersMaxValues |
runner |
|
testConstrainedParametersRandomValues |
runner |
|
testConstrainedParametersMinValues |
runner |
|
testArguments |
runner |
|
testOptions |
runner |
|
testDefaultParameters |
runner |
|
testParameters |
runner |
|
testPresets |
runner |
|
testConfiguration |
|
@BeforeClass |
@BeforeMethod |
|
setup |
runner |
@AfterMethod |
@AfterClass |
compbio.data.sequence.FastaSequenceGeneratorTester |
| |
@Test |
|
testProteinSequenceGeneration |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.cluster.drmaa.ClusterSessionTester |
| |
@Test |
|
testTaskList |
engine cluster |
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.data.sequence.FastaReaderTester |
| |
@Test |
|
test |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.data.sequence.FastaSequenceTester |
| |
@Test |
|
testGetFormattedFasta |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.data.sequence.SequenceUtilTester |
| |
@Test |
|
testReadIUPredForGlobDomain |
|
|
testDeepCleanSequence |
|
|
testReadIUPredForShortAndLongDisorder |
|
|
testCleanProteinSequence |
|
|
testReadWriteFasta |
|
|
testReadAAConResults |
|
|
testReadGlobPlotResults |
|
|
testReadDisemblResults |
|
|
loadJronnFile |
|
|
testisNonAmbNucleotideSequence |
|
|
testisProteinSequence |
|
|
testCleanSequence |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.msa.TcoffeeParametersTester |
| |
@Test |
|
testConstrainedParametersMaxValues |
runner non_windows |
|
testConstrainedParametersRandomValues |
runner non_windows |
|
testConstrainedParametersMinValues |
runner non_windows |
|
testArguments |
runner non_windows |
|
testOptions |
runner non_windows |
|
testDefaultParameters |
runner non_windows |
|
testParameters |
runner non_windows |
|
testPresets |
runner non_windows |
|
testConfiguration |
|
@BeforeClass |
@BeforeMethod |
|
setup |
runner non_windows |
@AfterMethod |
@AfterClass |
compbio.engine.cluster.drmaa.UtilTester |
| |
@Test |
|
testParser |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.runner.msa.ClustalWTester |
| |
@Test |
|
testRunOnCluster |
cluster runner |
|
testAddParameters |
|
|
testPersistance |
runner |
|
testOptionsLocally |
runner |
|
readStatisticsClusterExecution |
cluster runner |
|
testRunWithMatrix |
runner |
|
testConfigurationLoading |
runner |
|
readStatistics |
runner |
|
testRunLocally |
runner |
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.engine.conf.DirectoryManagerTester |
| |
@Test |
|
testGetDirectory |
|
|
testNanoTime |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.metadata.PresetTester |
| |
@Test |
|
testPresetWithMuptiOptions |
|
|
marshallPreset |
|
|
validatePresets |
|
@BeforeClass |
@BeforeMethod |
@AfterMethod |
@AfterClass |
compbio.metadata.OptionMarshallerTester |
| |
@Test |
|
testUnMarshalling |
|
|
testMarshalling |
|
@BeforeClass |
@BeforeMethod |
|
setup |
|
@AfterMethod |
@AfterClass |
compbio.runner.msa.ClustalWParametersTester |
| |
@Test |
|
testConstrainedParametersMaxValues |
runner |
|
testConstrainedParametersRandomValues |
runner |
|
testConstrainedParametersMinValues |
runner |
|
testArguments |
runner |
|
testOptions |
runner |
|
testDefaultParameters |
runner |
|
testParameters |
runner |
|
testPresets |
runner |
|
testConfiguration |
|
@BeforeClass |
@BeforeMethod |
|
setup |
runner |
@AfterMethod |
@AfterClass |
compbio.engine.conf.RunnerConfigMarshallerTester |
| |
@Test |
|
testValidationOnMarshalling |
|
|
testUnMarshalling |
|
|
testValidation |
|
|
testSchemaFromCodeGeneration |
|
|
testMarshalling |
|
@BeforeClass |
@BeforeMethod |
|
setup |
|
@AfterMethod |
@AfterClass |