= Archaeopteryx Documentation =
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= Introduction =

Under development!

Documentation, tutorial, and examples for visualization, analysis, and editing of phylogenetic trees with [http://www.phylosoft.org/archaeopteryx/ Archaeopteryx].

Author: [http://www.cmzmasek.net/ Christian M Zmasek], Sanford-Burnham Medical Research Institute

 
Copyright (C) 2012 Christian M Zmasek. All rights reserved.



= Frequently Asked Questions =

== How to read and display vector or expression data ==

Aptx can be used to display vector or expression data associated with tree nodes:

  # Ensure the configuration file contains this line: "show_vector_data:               display yes"

  # Start Aptx and read in a tree ([http://forester.googlecode.com/files/apaf.xml example tree])

  # Open "Tools" menu and select "read Vector/Expression Values"



"show_vector_data: display no"