+version 2\r
+\r
+DONE: Current stat collector has to rely on file dates! \r
+DONE: Help information? - relative - client to add host and context info\r
+DONE: statistics - result files \r
+DONE: Good toString method for Limits (test with command line client -limits)\r
+DONE: install JABA 1 stat server \r
+DONE: Get path to Java executable from JAVA_HOME ? (for Jronn AACon) \r
+\r
+DONE: GET rid of binaries/help directory!\r
+DONE: update binaries\r
+ DONE: muscle binary version 3.8.31 for win/lin32/lin64 and sources, docs in website/prog_docs\r
+ DONE: test Muscle on the cluster\r
+ DONE: test Muscle compilation\r
+ DONE: probcons up-to-date\r
+ DONE: clustal up-to-date \r
+ DONE: update tcoffee (8.99 latest) source code updated docs updated \r
+ DONE: tcoffee compilation for IA32 \r
+ DONE: update Mafft (6.857 latest) for win/lin32/lin64 and sources, no docs updates\r
+DONE: make sure conf files are optional!\r
+\r
+Cluster stats: \r
+ DONE: cancelled should not be reported as incomplete!\r
+ DONE: ant task to clean up clean stat db task before packing web app\r
+ DONE: pack web apps with stat db (NOT TESTED!)\r
+ DONE: change input size bites\r
+ DONE: add help info for each column in the detailed job list table\r
+ DONE: replace default -1 with ? \r
+ DONE: delete and re-import the database to fix clustal input staff \r
+\r
+DONE: Test all WS as names from Executables were removed\r
+DONE: Add default names for input and output in every executable and use them consistently\r
+ throughts (e.g. in all WS). Best of all use the same name from SceletalExectuable \r
+ For statistics. \r
+\r
+DONE: FIXED Conecting to JABAWS version 2 service\r
+ 09-Feb-2011 15:27:53 compbio.ws.client.Jws2Client connect\r
+ INFO: Connected successfully!\r
+ Exception in thread "main" java.lang.NullPointerException\r
+ at compbio.ws.client.MetadataHelper.getParametersList(MetadataHelper.java:30)\r
+ at compbio.ws.client.Jws2Client.<init>(Jws2Client.java:179)\r
+ at compbio.ws.client.Jws2Client.main(Jws2Client.java:483)\r
+\r
+DONE: ScoreManager should output scores properly \r
+DONE: Allow empty Parameters and Preset files! \r
+DONE: Check the WS input and reject it on submission rather then of access with error message\r
+\r
+DONE: Add registry service to query services status\r
+DONE: Refactor web services checker to enable a programmatic access to its methods.\r
+DONE: Finish the client\r
+DONE: Add AACon ws\r
+DONE: Add iupred ws http://iupred.enzim.hu/\r
+DONE: Add globprot ws - does not report raw scores, just regions\r
+DONE: Add ronn ws\r
+DONE: Define limits for presets - if required\r
+DONE: Add logging facility to WSTester so more details of the problem can be reported\r
+DONE: Statistics collector for engines (number of operations/timing)\r
+\r
+\r
+version 1\r