A few more tests for IUPred

[jabaws.git] / TODO.txt

diff --git a/TODO.txt b/TODO.txt
index e3f5142..dbd8400 100644 (file)
--- a/TODO.txt
+++ b/TODO.txt
@@ -1,11 +1,58 @@
 TODO: \r
 TODO: \r

+Registry 1 week\r
+webservices - 1 week\r
+client - 1 week\r
+docs - 1 week\r

 \r
 \r

-Add registry service to query services status\r
+Cluster stats: \r
+ +cancelled should not be reported as incomplete!\r
+ -Remove hyperlinks from tasks which workdirs were removed \r
+ -graph generation \r
+ -user documentation (do not forget how to enable follow symlinks!)\r
+ -use the same name for output for different executables\r
+ +ant task to clean up clean stat db task before packing web app\r
+ +pack web apps with stat db (NOT TESTED!)\r
+ +change input size bites\r
+ +add help info for each column in the detailed job list table\r
+ +replace default -1 with ? \r
+ +delete and re-import the database to fix clustal input staff    \r

 \r
 \r

-Refactor web services checker to enable a programmatic access to its methods.\r
-Rename it to avoid confusion with jabaws client\r
+add to help text: To disable a web service remove it from WEB-INF/sun-jaxws.xml descriptor\r

 \r
 \r

-Finish the client\r
+add to help: VirtualBox 4.0.4 works fine with JABAWS update links \r
+\r
+rename jaba.war to jabaws.war and make sure jabaws context path is used throughout. \r
+\r
+Current stat collector has to rely on file dates! \r
+\r
+Test all WS as names from Executables were removed\r
+\r
+Add default names for input and output in every executable and use them consistently\r
+throughts (e.g. in all WS). Best of all use the same name from SceletalExectuable \r
+For statistics. \r
+\r
+FIXME: \r
+Conecting to JABAWS version 2 service\r
+09-Feb-2011 15:27:53 compbio.ws.client.Jws2Client connect\r
+INFO: Connected successfully!\r
+Exception in thread "main" java.lang.NullPointerException\r
+       at compbio.ws.client.MetadataHelper.getParametersList(MetadataHelper.java:30)\r
+       at compbio.ws.client.Jws2Client.<init>(Jws2Client.java:179)\r
+       at compbio.ws.client.Jws2Client.main(Jws2Client.java:483)\r
+       \r
+ScoreManager should output scores properly \r
+\r
+Allow empty Parameters and Preset files! \r
+\r
+Check the WS input and reject it on submission rather then of access with error message\r
+\r
+Globprot need a proper reference to bio python and sav_gol binaries -> they should be \r
+somehow taken from disembl. \r
+\r
++Add registry service to query services status\r
+\r
++Refactor web services checker to enable a programmatic access to its methods.\r
++Finish the client\r

 \r
 Add interface for Jalview annotation \r
 Add the method to return Jalview Annotation to SequenceAnnotation IF  \r
 \r
 Add interface for Jalview annotation \r
 Add the method to return Jalview Annotation to SequenceAnnotation IF  \r