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update
[jabaws.git]
/
binaries
/
src
/
compilebin.sh
diff --git
a/binaries/src/compilebin.sh
b/binaries/src/compilebin.sh
index
cd3b63a
..
441cdb0
100644
(file)
--- a/
binaries/src/compilebin.sh
+++ b/
binaries/src/compilebin.sh
@@
-10,16
+10,19
@@
make
chmod +x src/clustalw2
cd ..
chmod +x src/clustalw2
cd ..
+echo "Compiling Clustal Omega..."
+cd clustalo
+make clean
+chmod +x ./configure
+./configure
+make
+cd ..
+
echo "Compiling Mafft..."
cd mafft/core
make clean
make
echo "Compiling Mafft..."
cd mafft/core
make clean
make
-chmod +x mafft
cd ../..
cd ../..
-cd mafft/binaries
-chmod +x *
-cd ../..
-
echo "Compiling Mafft dependency fasta34..."
cd fasta34
echo "Compiling Mafft dependency fasta34..."
cd fasta34
@@
-31,9
+34,8
@@
cd ..
echo "Compiling Muscle..."
cd muscle
echo "Compiling Muscle..."
cd muscle
-rm -f *.o
+rm -f *.o muscle
make
make
-chmod +x muscle
cd ..
echo "Compiling Probcons..."
cd ..
echo "Compiling Probcons..."
@@
-59,6
+61,7
@@
chmod +x disembl DisEMBL.py
echo "Compiling DisEMBL dependancy Tisean... "
cd Tisean_3.0.1
echo "Compiling DisEMBL dependancy Tisean... "
cd Tisean_3.0.1
+chmod +x ./configure
./configure
make
cp source_c/sav_gol ../
./configure
make
cp source_c/sav_gol ../
@@
-67,11
+70,17
@@
echo "DONE"
chmod +x sav_gol
cd ..
chmod +x sav_gol
cd ..
-# TODO copy sav_gol other from disembl
-echo "Compiling GlobPlot..."
+echo "Setting up GlobPlot ..."
+cp disembl/sav_gol globplot/sav_gol
cd globplot
cd globplot
-echo "DONE"
-# TODO deal with the links
chmod +x GlobPlot.py
chmod +x GlobPlot.py
+echo "DONE"
+cd ..
+
+echo "Compiling IUPred..."
+cd iupred
+make clean
+make
+echo "DONE"
cd ..
cd ..