-columns are selected, you should use the <a href="features/regionHiding.html">Hide Regions feature</a> instead.-->
- </td>
- </tr>
- <tr>
- <td><strong>Control 'F'</strong></td>
- <td>Both</td>
- <td>Launches the search window</td>
- </tr>
- <tr>
- <td><strong>H</strong></td>
- <td>Both</td>
- <td>Hides / Reveals selected columns and sequences</td>
- </tr>
- <tr>
- <td><strong>Control 'H'</strong></td>
- <td>Both</td>
- <td>Hides / Reveals selected columns</td>
- </tr>
- <tr>
- <td><strong>Shift 'H'</strong></td>
- <td>Both</td>
- <td>Hides / Reveals selected sequences</td>
- </tr>
- <tr>
- <td><strong>Control + Shift 'H'</strong></td>
- <td>Both</td>
- <td>Hides everything but the current selection</td>
- </tr>
- <tr>
- <td><strong>Control 'O'</strong></td>
- <td>Both</td>
- <td>Input new alignment from file</td>
- </tr>
- <tr>
- <td><strong>Control 'S'</strong></td>
- <td>Both</td>
- <td>Save alignment with current filename and format</td>
- </tr>
- <tr>
- <td><strong>Control Shift 'S'</strong></td>
- <td>Both</td>
- <td>Save alignment as a new file or with a different format</td>
- </tr>
- <tr>
- <td><strong>Control 'P'</strong></td>
- <td>Both</td>
- <td>Opens the print dialog box to print the current view</td>
- </tr>
- <tr>
- <td><strong>Control 'W'</strong></td>
- <td>Both</td>
- <td>Closes the current view or the current alignment</td>
- </tr>
- <tr>
- <td><strong>Backspace</strong></td>
- <td>Normal</td>
- <td>Delete the currently selected rows or columns from the alignment.</td>
- </tr>
- <tr>
- <td><strong>Control 'L'</strong></td>
- <td>Left</td>
- <td>Remove columns to left of left-most column marker.</td>
- </tr>
- <tr>
- <td><strong>Control 'R'</strong></td>
- <td>Both</td>
- <td>Remove columns to right of right-most column marker.</td>
- </tr>
- <tr>
- <td><strong>Control 'E'</strong></td>
- <td>Both</td>
- <td>Remove gapped columns</td>
- </tr>
- <tr>
- <td><strong>Control Shift 'E'</strong></td>
- <td>Both</td>
- <td>Remove all gaps</td>
- </tr>
- <tr>
- <td><strong>Control 'D'</strong></td>
- <td>Both</td>
- <td>Open the 'Remove redundancy' Dialog box.</td>
- </tr>
- <tr>
- <td><strong></strong></td>
- <td>Normal</td>
- <td></td>
- </tr>
-</table>
-<p>The compound commands available in the Cursor mode are summarised
-below. Single letter commands can be prefixed by digits to specify a repetition
-number, and some more complex commands take one or more numeric
-parameters (prefixing the command key and separated by commas).</p>
-<table border=1><tr><td><strong>Compound
-Command</strong></td><td>Mode</td><td>Action (and parameter description)</td></tr>
-<tr><td><strong>0-9</strong></td><td>Cursor</td><td>Begin entering a
-numeric parameter (<strong><em>p</em></strong>) or repetition number for a cursor movement or edit
-command.</td></tr>
-<tr><td><strong>,</strong></td><td>Cursor</td><td>Separates one or
-more numeric parameters (<em>e.g. <strong>p1</strong>,<strong>p2</strong></em>) for a command.</td></tr>
-<tr><td><strong><strong><em>p1</em></strong>,<strong><em>p2</em></strong><br>Return</strong></td><td>Cursor</td><td>Move cursor to a particular column (<strong><em>p1</em></strong>) and row (<strong><em>p2</em></strong>) in the alignment.<br><em>e.g. '5,6<Return>' moves the cursor to the 5th column in the 6th sequence.</em></td></tr>
-<tr><td><strong><em>p</em>S</strong></td><td>Cursor</td><td>Jump to the <strong><em>p</em></strong>'th sequence in the alignment.</td></tr>
-<tr><td><strong><em>p</em>P</strong></td><td>Cursor</td><td>Jump to <em><strong>p</strong></em>'th amino acid in current sequence.</td></tr>
-<tr><td><strong><em>p</em>C</strong></td><td>Cursor</td><td>Jump to <em><strong>p</strong></em>'th column in the alignment.</td></tr>
-<tr><td><strong>Q</strong></td><td>Cursor</td><td>Marks the top left corner of the selection area</td></tr>
-<tr><td><strong>M</strong></td><td>Cursor</td><td>Marks the bottom right corner of the selection area</td></tr>
-<tr><td><strong><em>[p]</em><br>Space</strong></td><td>Cursor</td><td>Inserts
-one (or optionally <strong><em>p</em></strong>) gaps at the current position.<br><em>Hold down Control or Shift to insert gaps over a sequence group</em></td></tr>
-<tr><td><strong><em>[p]</em><br>Delete<br></strong></td><td>Cursor</td><td>Removes
-one (or optionally <strong><em>p</em></strong>) gaps at the cursor position.<br><em>Hold down Control or Shift to insert gaps over a sequence group</em></td></tr>
-<tr><td><strong><em>[p]</em><br>Backspace<br></strong></td><td>Cursor</td><td>Removes
-one (or optionally <strong><em>p</em></strong>) gaps at the cursor position.<br><em>Hold down Control or Shift to insert gaps over a sequence group</em></td></tr></table>
-<p> </p>
-<p> </p>
+columns are selected, you should use the <a href="features/hiddenRegions.html">Hide Regions feature</a> instead.-->
+ </td>
+ </tr>
+ <tr>
+ <td><strong>Control 'F'</strong></td>
+ <td>Both</td>
+ <td>Launches the search window</td>
+ </tr>
+ <tr><td><strong>B</strong></td>
+ <td>Both</td>
+ <td>Add highlighted columns to current column selection</td>
+ </tr>
+ <tr><td><strong>Alt 'B'</strong></td>
+ <td>Both</td>
+ <td>Add all but the currently highlighted columns to current selection</td>
+ </tr>
+ <tr><td><strong>Control 'B'</strong></td>
+ <td>Both</td>
+ <td>Toggle the column selection marks for the currently highlighted
+ columns (or all others if Alt is also pressed)</td>
+ </tr>
+ <tr>
+ <td><strong>H</strong></td>
+ <td>Both</td>
+ <td>Hides / Reveals selected columns and sequences</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'H'</strong></td>
+ <td>Both</td>
+ <td>Hides / Reveals selected columns</td>
+ </tr>
+ <tr>
+ <td><strong>Shift 'H'</strong></td>
+ <td>Both</td>
+ <td>Hides / Reveals selected sequences</td>
+ </tr>
+ <tr>
+ <td><strong>Control + Shift 'H'</strong></td>
+ <td>Both</td>
+ <td>Hides everything but the current selection</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'O'</strong></td>
+ <td>Both</td>
+ <td>Input new alignment from file</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'S'</strong></td>
+ <td>Both</td>
+ <td>Save alignment with current filename and format</td>
+ </tr>
+ <tr>
+ <td><strong>Control Shift 'S'</strong></td>
+ <td>Both</td>
+ <td>Save alignment as a new file or with a different format</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'P'</strong></td>
+ <td>Both</td>
+ <td>Opens the print dialog box to print the current view</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'W'</strong></td>
+ <td>Both</td>
+ <td>Closes the current view or the current alignment</td>
+ </tr>
+ <tr>
+ <td><strong>Backspace</strong></td>
+ <td>Normal</td>
+ <td>Delete the currently selected rows or columns from the
+ alignment.</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'L'</strong></td>
+ <td>Left</td>
+ <td>Remove columns to left of left-most column marker.</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'R'</strong></td>
+ <td>Both</td>
+ <td>Remove columns to right of right-most column marker.</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'E'</strong></td>
+ <td>Both</td>
+ <td>Remove gapped columns</td>
+ </tr>
+ <tr>
+ <td><strong>Control Shift 'E'</strong></td>
+ <td>Both</td>
+ <td>Remove all gaps</td>
+ </tr>
+ <tr>
+ <td><strong>Control 'D'</strong></td>
+ <td>Both</td>
+ <td>Open the 'Remove redundancy' Dialog box.</td>
+ </tr>
+ <tr>
+ <td><strong></strong></td>
+ <td>Normal</td>
+ <td></td>
+ </tr>
+ </table>
+ <p>The compound commands available in the Cursor mode are
+ summarised below. Single letter commands can be prefixed by digits
+ to specify a repetition number, and some more complex commands take
+ one or more numeric parameters (prefixing the command key and
+ separated by commas).</p>
+ <table border=1>
+ <tr>
+ <td><strong>Compound Command</strong></td>
+ <td>Mode</td>
+ <td>Action (and parameter description)</td>
+ </tr>
+ <tr>
+ <td><strong>0-9</strong></td>
+ <td>Cursor</td>
+ <td>Begin entering a numeric parameter (<strong><em>p</em></strong>)
+ or repetition number for a cursor movement or edit command.
+ </td>
+ </tr>
+ <tr>
+ <td><strong>,</strong></td>
+ <td>Cursor</td>
+ <td>Separates one or more numeric parameters (<em>e.g. <strong>p1</strong>,<strong>p2</strong></em>)
+ for a command.
+ </td>
+ </tr>
+ <tr>
+ <td><strong><strong><em>p1</em></strong>,<strong><em>p2</em></strong><br>Return</strong></td>
+ <td>Cursor</td>
+ <td>Move cursor to a particular column (<strong><em>p1</em></strong>)
+ and row (<strong><em>p2</em></strong>) in the alignment.<br>
+ <em>e.g. '5,6<Return>' moves the cursor to the 5th
+ column in the 6th sequence.</em></td>
+ </tr>
+ <tr>
+ <td><strong><em>p</em>S</strong></td>
+ <td>Cursor</td>
+ <td>Jump to the <strong><em>p</em></strong>'th sequence in
+ the alignment.
+ </td>
+ </tr>
+ <tr>
+ <td><strong><em>p</em>P</strong></td>
+ <td>Cursor</td>
+ <td>Jump to <em><strong>p</strong></em>'th amino acid in
+ current sequence.
+ </td>
+ </tr>
+ <tr>
+ <td><strong><em>p</em>C</strong></td>
+ <td>Cursor</td>
+ <td>Jump to <em><strong>p</strong></em>'th column in the
+ alignment.
+ </td>
+ </tr>
+ <tr>
+ <td><strong>Q</strong></td>
+ <td>Cursor</td>
+ <td>Marks the top left corner of the selection area</td>
+ </tr>
+ <tr>
+ <td><strong>M</strong></td>
+ <td>Cursor</td>
+ <td>Marks the bottom right corner of the selection area</td>
+ </tr>
+ <tr>
+ <td><strong><em>[p]</em><br>Space</strong></td>
+ <td>Cursor</td>
+ <td>Inserts one (or optionally <strong><em>p</em></strong>)
+ gaps at the current position.<br> <em>Hold down
+ Control or Shift to insert gaps over a sequence group</em></td>
+ </tr>
+ <tr>
+ <td><strong><em>[p]</em><br>Delete<br></strong></td>
+ <td>Cursor</td>
+ <td>Removes one (or optionally <strong><em>p</em></strong>)
+ gaps at the cursor position.<br> <em>Hold down Control
+ or Shift to insert gaps over a sequence group</em></td>
+ </tr>
+ <tr>
+ <td><strong><em>[p]</em><br>Backspace<br></strong></td>
+ <td>Cursor</td>
+ <td>Removes one (or optionally <strong><em>p</em></strong>)
+ gaps at the cursor position.<br> <em>Hold down Control
+ or Shift to insert gaps over a sequence group</em></td>
+ </tr>
+ </table>
+ <p> </p>
+ <p> </p>