- // OUT OF USE\r
- \r
-// public static final RNAstruct readRNAStructFile(String workDirectory,\r
-// String structFile) throws IOException, FileNotFoundException {\r
-// assert !compbio.util.Util.isEmpty(workDirectory);\r
-// assert !compbio.util.Util.isEmpty(structFile);\r
-// File sfile = new File(compbio.engine.client.Util.getFullPath(\r
-// workDirectory, structFile));\r
-// if(!(sfile.exists() && sfile.length() > 0)) {\r
-// throw new FileNotFoundException("Result for the jobId "\r
-// + workDirectory + "with file name " + structFile\r
-// + " is not found!");\r
-// }\r
-// return compbio.data.sequence.SequenceUtil.readRNAalifoldResults(\r
-// new FileInputStream(sfile));\r
-// }\r
- \r
- public static String readRNAStruct(String workDirectory,\r