import compbio.engine.client.PipedExecutable;\r
import compbio.engine.client.SkeletalExecutable;\r
import compbio.metadata.ResultNotAvailableException;\r
import compbio.engine.client.PipedExecutable;\r
import compbio.engine.client.SkeletalExecutable;\r
import compbio.metadata.ResultNotAvailableException;\r
\r
public class RNAalifold extends SkeletalExecutable<RNAalifold> \r
implements PipedExecutable<RNAalifold> {\r
\r
public class RNAalifold extends SkeletalExecutable<RNAalifold> \r
implements PipedExecutable<RNAalifold> {\r
private static Logger log = Logger.getLogger(RNAalifold.class);\r
\r
// May not be necessary as defult is "<space>" but still dont know\r
private static Logger log = Logger.getLogger(RNAalifold.class);\r
\r
// May not be necessary as defult is "<space>" but still dont know\r
public RNAStructScoreManager getResults(String workDirectory)\r
throws ResultNotAvailableException {\r
try {\r
public RNAStructScoreManager getResults(String workDirectory)\r
throws ResultNotAvailableException {\r
try {\r
} catch (FileNotFoundException e) {\r
log.error(e.getMessage(), e.getCause());\r
throw new ResultNotAvailableException(e);\r
} catch (FileNotFoundException e) {\r
log.error(e.getMessage(), e.getCause());\r
throw new ResultNotAvailableException(e);\r