+ <xs:complexType name="mapListType">
+ <xs:annotation>
+ <xs:documentation>
+ developed after mapRangeType from
+ http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes
+ </xs:documentation>
+ <xs:documentation>
+ This effectively represents a java.util.MapList
+ object
+ </xs:documentation>
+ </xs:annotation>
+ <xs:sequence>
+ <xs:element name="mapListFrom" minOccurs="0"
+ maxOccurs="unbounded">
+ <xs:annotation>
+ <xs:documentation> a region from start to end inclusive
+ </xs:documentation>
+ </xs:annotation>
+ <xs:complexType>
+ <xs:attribute name="start" type="xs:int"
+ use="required" />
+ <xs:attribute name="end" type="xs:int" use="required" />
+ </xs:complexType>
+ </xs:element>
+ <xs:element name="mapListTo" minOccurs="0"
+ maxOccurs="unbounded">
+ <xs:annotation>
+ <xs:documentation> a region from start to end inclusive
+ </xs:documentation>
+ </xs:annotation>
+ <xs:complexType>
+ <xs:attribute name="start" type="xs:int"
+ use="required" />
+ <xs:attribute name="end" type="xs:int" use="required" />
+ </xs:complexType>
+ </xs:element>
+ </xs:sequence>
+ <xs:attribute name="mapFromUnit"
+ type="xs:positiveInteger" use="required">
+ <xs:annotation>
+ <xs:documentation>number of dictionary symbol widths involved in
+ each
+ mapped position on this sequence (for example, 3 for a dna
+ sequence exon
+ region that is being mapped to a protein sequence).
+ This is optional,
+ since the unit can be usually be inferred from the
+ dictionary type of
+ each sequence involved in the mapping.
+ </xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ <xs:attribute name="mapToUnit" type="xs:positiveInteger"
+ use="required">
+ <xs:annotation>
+ <xs:documentation>number of dictionary symbol widths involved in
+ each
+ mapped position on this sequence (for example, 3 for a dna
+ sequence exon
+ region that is being mapped to a protein sequence).
+ This is optional,
+ since the unit can be usually be inferred from the
+ dictionary type of
+ each sequence involved in the mapping.
+ </xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ </xs:complexType>
+ <xs:element name="Mapping">
+ <xs:complexType>
+ <xs:annotation>
+ <xs:documentation>
+ Represent the jalview.datamodel.Mapping object -
+ it also provides
+ a way of storing sequences that are mapped 'to'
+ without adding them
+ to the sequence set (which will mean they are
+ then added to the alignment too).
+ </xs:documentation>
+ </xs:annotation>
+ <xs:complexContent>
+ <xs:extension base="vamsas:mapListType">
+ <xs:sequence>
+ <xs:choice minOccurs="0" maxOccurs="1">
+ <xs:element ref="vamsas:Sequence" />
+ <xs:element name="dseqFor">
+ <xs:simpleType>
+ <xs:restriction base="xs:string">
+ <xs:annotation>
+ <xs:documentation>The sequence whose dataset sequence is to
+ be referenced here
+ </xs:documentation>
+ </xs:annotation>
+ </xs:restriction>
+ </xs:simpleType>
+ </xs:element>
+ </xs:choice>
+ </xs:sequence>
+ <xs:attribute name="mappingType" type="xs:string"
+ use="optional">
+ <xs:annotation>
+ <xs:documentation>Biotype of the mapping e.g. CdsToPeptide
+ </xs:documentation>
+ </xs:annotation>
+ </xs:attribute>
+ </xs:extension>
+ </xs:complexContent>
+ </xs:complexType>
+ </xs:element>
+ <xs:element name="AlcodonFrame">