+ <xs:element name="sequence" type="xs:string" minOccurs="0" />
+ <xs:element name="name" type="xs:string" minOccurs="0" />
+ </xs:sequence>
+ <xs:attribute name="id" type="xs:string" />
+ <xs:attribute name="description" type="xs:string" />
+ </xs:complexType>
+ <xs:complexType name="MatrixType">
+ <xs:annotation>
+ <xs:documentation>Represents matrix data imported to Jalview, and the
+ results of any derived calculations (independent of a particular
+ view
+ on the matrix).
+ </xs:documentation>
+ </xs:annotation>
+ <xs:sequence>
+ <xs:element name="elements" type="xs:string" minOccurs="1"
+ maxOccurs="1">
+ <xs:annotation>
+ <xs:documentation>serialised representation of matrix as one or
+ more sets of comma separated values
+ </xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element name="groups" type="xs:string" minOccurs="0"
+ maxOccurs="unbounded">
+ <xs:annotation>
+ <xs:documentation>Comma separated series of longs formed from
+ bitsets defining partitions on the rows/columns of the matrix
+ </xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element name="newick" type="xs:string" minOccurs="0"
+ maxOccurs="unbounded">
+ <xs:annotation>
+ <xs:documentation>tree computed for this</xs:documentation>
+ </xs:annotation>
+ </xs:element>
+ <xs:element name="property" type="vamsas:property"
+ minOccurs="0" maxOccurs="unbounded" />
+ </xs:sequence>
+
+ <xs:attribute name="type" type="xs:string" use="required" />
+ <xs:attribute name="rows" type="xs:integer"
+ use="required" />
+ <xs:attribute name="cols" type="xs:integer"
+ use="required" />
+ <xs:attribute name="treeMethod" type="xs:string"
+ use="optional" />
+ <xs:attribute name="cutHeight" type="xs:double"
+ use="optional" />
+ <xs:attribute name="id" type="xs:string" use="required" />
+
+ </xs:complexType>
+ <xs:complexType name="MapOnAMatrixType">
+ <xs:annotation>
+ <xs:documentation>Defines a mapping from the local frame to a matrix
+ and its associated data specified by MatrixType
+ </xs:documentation>
+ </xs:annotation>
+ <xs:sequence>
+ <xs:element name="property" type="vamsas:property"
+ minOccurs="0" maxOccurs="unbounded" />
+ <xs:element name="mapping" type="vamsas:mapListType"
+ minOccurs="0" maxOccurs="1">
+ <xs:annotation>
+ <xs:documentation>mapping from the matrix row and column positions
+ to
+ associated reference frame
+ </xs:documentation>
+ </xs:annotation>
+ </xs:element>