+package compbio.controllers;
+
+import java.util.Map;
+
+import org.springframework.stereotype.Controller;
+import org.springframework.web.bind.annotation.RequestMapping;
+import org.springframework.web.bind.annotation.RequestMethod;
+import org.springframework.web.bind.annotation.RequestParam;
+
+import compbio.statistic.CassandraRequester;
+
+/**
+ * Spring controller for dealing with proteomes. This version works in the
+ * servlet style.
+ *
+ * @author Alexander Sherstnev
+ * @author Natasha Sherstneva
+ *
+ * @since 0.5
+ * @version 1.0 December 2014
+ */
+@Controller
+@RequestMapping("/proteomes")
+public class ProteomeController extends BasicController {
+
+ @RequestMapping(value = "/load", method = RequestMethod.GET)
+ public String loadProteome(Map<String, Object> model) {
+ model.put("username", getPrincipalName());
+ return "support/Notimplemented";
+ }
+
+ @RequestMapping(value = "view", method = RequestMethod.GET)
+ public String viewProteome(Map<String, Object> model) {
+ model.put("username", getPrincipalName());
+ return "support/Notimplemented";
+ }
+
+ @RequestMapping(value = "launch", method = RequestMethod.GET)
+ public String launchjobProteome(Map<String, Object> model) {
+ model.put("username", getPrincipalName());
+ return "support/Notimplemented";
+ }
+
+ @RequestMapping(value = "load/result", method = RequestMethod.GET)
+ public String countSequences(@RequestParam("TypeFeatures") String typeFeature, @RequestParam("Percent") String percent,
+ Map<String, Object> model) {
+ model.put("username", getPrincipalName());
+ final long startTime = System.currentTimeMillis();
+
+ if (percent.equals("")) {
+ model.put("error", "The value must not be empty");
+ model.put("type", typeFeature);
+ model.put("value", percent);
+ return "query/SSFeatures";
+ }
+
+ int realpercent;
+ try {
+ realpercent = Integer.parseInt(percent.trim());
+ } catch (NumberFormatException e) {
+ model.put("error", "The value must be an integer number");
+ model.put("value", percent);
+ return "query/SSFeatures";
+ }
+
+ if (realpercent < 1) {
+ model.put("error", "The value must be greater than 0");
+ model.put("value", percent);
+ return "query/SSFeatures";
+ }
+
+ if (realpercent > 100) {
+ model.put("error", "The value must be less than 100");
+ model.put("value", percent);
+ return "query/SSFeatures";
+ }
+
+ CassandraRequester cr = new CassandraRequester();
+ Map<String, String> r = cr.readProteinsPrediction(typeFeature, realpercent);
+ model.put("results", r);
+ model.put("njobs", 0);
+ if (null != r) {
+ model.put("njobs", r.size());
+ }
+ final long endTime = System.currentTimeMillis();
+ model.put("timeExecution", (endTime - startTime));
+ model.put("feature", typeFeature);
+ model.put("percent", realpercent);
+ return "reports/SSFeatures";
+ }
+
+}