-package compbio.controllers;
-
-import java.util.List;
-import java.util.Map;
-
-import org.springframework.stereotype.Controller;
-import org.springframework.web.bind.annotation.RequestMapping;
-import org.springframework.web.bind.annotation.RequestMethod;
-import org.springframework.web.bind.annotation.RequestParam;
-
-import compbio.cassandra.DataBase;
-
-import compbio.statistic.CassandraRequester;
-
-/**
- * @author Alexander Sherstnev
- * @author Natasha Sherstneva
- */
-@Controller
-public class SequenceSearchController {
-
- @RequestMapping(value = "/sequence/query1", method = RequestMethod.GET)
- public String formSequenceQuery(Map<String, Object> model) {
- return "queryProteinSequence";
- }
-
- @RequestMapping(value = "/sequence/query2", method = RequestMethod.GET)
- public String formCounterQuery(Map<String, Object> model) {
- return "queryProteinSequenceCounter";
- }
-
- @RequestMapping(value = "/sequence/querysequence", method = RequestMethod.GET)
- public String findSequence(@RequestParam("sequence") String sequence, @RequestParam("protein") String flag, Map<String, Object> model) {
- final long startTime = System.currentTimeMillis();
-
- String trimmedsequence = sequence.replaceAll("\\s", "");
- model.put("njobs", 0);
- model.put("prot", trimmedsequence);
- model.put("flag", flag);
-
- if (0 < trimmedsequence.length()) {
- CassandraRequester cr = new CassandraRequester();
- List<DataBase> r = cr.readProteins(trimmedsequence, flag);
- model.put("results", r);
- if (null != r) {
- System.out.println("result size = " + r.size());
- model.put("njobs", r.size());
- }
- }
- final long endTime = System.currentTimeMillis();
- model.put("timeExecution", (endTime - startTime));
- return "reportProteinSequences";
- }
-
- @RequestMapping(value = "/sequence/querycounter", method = RequestMethod.GET)
- public String countSequences(@RequestParam("counterJob") int counter, Map<String, Object> model) {
- final long startTime = System.currentTimeMillis();
-
- CassandraRequester cr = new CassandraRequester();
- List<DataBase> r = cr.readProteinByCounter(counter);
- model.put("results", r);
- model.put("njobs", 0);
- if (null != r) {
- model.put("njobs", r.size());
- }
- final long endTime = System.currentTimeMillis();
- model.put("timeExecution", (endTime - startTime));
- model.put("counter", counter);
- return "reportProteinSequencesCounter";
- }
-
-}