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Merge branch 'features/JAL-1605_html-svg-export' into develop
[jalview.git]
/
src
/
jalview
/
analysis
/
AlignmentUtils.java
diff --git
a/src/jalview/analysis/AlignmentUtils.java
b/src/jalview/analysis/AlignmentUtils.java
index
929a855
..
6385fa7
100644
(file)
--- a/
src/jalview/analysis/AlignmentUtils.java
+++ b/
src/jalview/analysis/AlignmentUtils.java
@@
-20,6
+20,7
@@
*/
package jalview.analysis;
*/
package jalview.analysis;
+import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.SequenceI;
@@
-121,6
+122,16
@@
public class AlignmentUtils
}
AlignmentI newAl = new jalview.datamodel.Alignment(
sq.toArray(new SequenceI[0]));
}
AlignmentI newAl = new jalview.datamodel.Alignment(
sq.toArray(new SequenceI[0]));
+ for (SequenceI s : sq)
+ {
+ if (s.getAnnotation() != null)
+ {
+ for (AlignmentAnnotation aa : s.getAnnotation())
+ {
+ newAl.addAnnotation(aa);
+ }
+ }
+ }
newAl.setDataset(core.getDataset());
return newAl;
}
newAl.setDataset(core.getDataset());
return newAl;
}