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Applet reads in annotation files
[jalview.git]
/
src
/
jalview
/
appletgui
/
AlignViewport.java
diff --git
a/src/jalview/appletgui/AlignViewport.java
b/src/jalview/appletgui/AlignViewport.java
index
e9078dd
..
50a90fe
100755
(executable)
--- a/
src/jalview/appletgui/AlignViewport.java
+++ b/
src/jalview/appletgui/AlignViewport.java
@@
-221,7
+221,7
@@
public class AlignViewport
annotations,
\r
0f, // cons.qualityRange[0].floatValue(),
\r
11f, // cons.qualityRange[1].floatValue()
\r
annotations,
\r
0f, // cons.qualityRange[0].floatValue(),
\r
11f, // cons.qualityRange[1].floatValue()
\r
- AlignmentAnnotation.LINE_GRAPH);
\r
+ AlignmentAnnotation.BAR_GRAPH);
\r
if (showConservation)
\r
{
\r
alignment.addAnnotation(conservation);
\r
if (showConservation)
\r
{
\r
alignment.addAnnotation(conservation);
\r
@@
-231,7
+231,7
@@
public class AlignViewport
qannotations,
\r
cons.qualityRange[0].floatValue(),
\r
cons.qualityRange[1].floatValue(),
\r
qannotations,
\r
cons.qualityRange[0].floatValue(),
\r
cons.qualityRange[1].floatValue(),
\r
- AlignmentAnnotation.LINE_GRAPH);
\r
+ AlignmentAnnotation.BAR_GRAPH);
\r
if (showQuality)
\r
{
\r
alignment.addAnnotation(quality);
\r
if (showQuality)
\r
{
\r
alignment.addAnnotation(quality);
\r
@@
-294,7
+294,7
@@
public class AlignViewport
if (consensus == null)
\r
{
\r
consensus = new AlignmentAnnotation("Consensus",
\r
if (consensus == null)
\r
{
\r
consensus = new AlignmentAnnotation("Consensus",
\r
- "PID", annotations, 0f, 100f, AlignmentAnnotation.LINE_GRAPH);
\r
+ "PID", annotations, 0f, 100f, AlignmentAnnotation.BAR_GRAPH);
\r
if (showConsensus)
\r
{
\r
alignment.addAnnotation(consensus);
\r
if (showConsensus)
\r
{
\r
alignment.addAnnotation(consensus);
\r