git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-4020 Added search for PyMOLWinWithConsole.bat (and PyMOLWin.exe) in likely places...
[jalview.git]
/
src
/
jalview
/
appletgui
/
AlignmentPanel.java
diff --git
a/src/jalview/appletgui/AlignmentPanel.java
b/src/jalview/appletgui/AlignmentPanel.java
index
270b2f7
..
fd75296
100644
(file)
--- a/
src/jalview/appletgui/AlignmentPanel.java
+++ b/
src/jalview/appletgui/AlignmentPanel.java
@@
-46,6
+46,7
@@
import java.awt.event.ComponentEvent;
import java.beans.PropertyChangeEvent;
import java.util.List;
import java.beans.PropertyChangeEvent;
import java.util.List;
+@SuppressWarnings("serial")
public class AlignmentPanel extends Panel
implements AdjustmentListener, AlignmentViewPanel, ViewportListenerI
{
public class AlignmentPanel extends Panel
implements AdjustmentListener, AlignmentViewPanel, ViewportListenerI
{
@@
-344,7
+345,7
@@
public class AlignmentPanel extends Panel
int verticalOffset, boolean redrawOverview, boolean centre)
{
// do we need to scroll the panel?
int verticalOffset, boolean redrawOverview, boolean centre)
{
// do we need to scroll the panel?
- if (results != null && results.getSize() > 0)
+ if (results != null && results.getCount() > 0)
{
AlignmentI alignment = av.getAlignment();
int seqIndex = alignment.findIndex(results);
{
AlignmentI alignment = av.getAlignment();
int seqIndex = alignment.findIndex(results);
@@
-415,14
+416,14
@@
public class AlignmentPanel extends Panel
public boolean scrollTo(int ostart, int end, int seqIndex,
boolean scrollToNearest, boolean redrawOverview)
{
public boolean scrollTo(int ostart, int end, int seqIndex,
boolean scrollToNearest, boolean redrawOverview)
{
- int startv, endv, starts, ends, width;
+ int startv, endv, starts, ends;// , width;
int start = -1;
if (av.hasHiddenColumns())
{
AlignmentI al = av.getAlignment();
int start = -1;
if (av.hasHiddenColumns())
{
AlignmentI al = av.getAlignment();
- start = al.getHiddenColumns().findColumnPosition(ostart);
- end = al.getHiddenColumns().findColumnPosition(end);
+ start = al.getHiddenColumns().absoluteToVisibleColumn(ostart);
+ end = al.getHiddenColumns().absoluteToVisibleColumn(end);
if (start == end)
{
if (!scrollToNearest && !al.getHiddenColumns().isVisible(ostart))
if (start == end)
{
if (!scrollToNearest && !al.getHiddenColumns().isVisible(ostart))
@@
-669,14
+670,9
@@
public class AlignmentPanel extends Panel
}
else
{
}
else
{
- int width = av.getAlignment().getWidth();
+ int width = av.getAlignment().getVisibleWidth();
int height = av.getAlignment().getHeight();
int height = av.getAlignment().getHeight();
- if (av.hasHiddenColumns())
- {
- width = av.getAlignment().getHiddenColumns()
- .findColumnPosition(width);
- }
if (x < 0)
{
x = 0;
if (x < 0)
{
x = 0;