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JAL-1115 refactor base collection for Alignment from Vector to locally synchronized...
[jalview.git]
/
src
/
jalview
/
appletgui
/
PaintRefresher.java
diff --git
a/src/jalview/appletgui/PaintRefresher.java
b/src/jalview/appletgui/PaintRefresher.java
index
50e5a62
..
fbdea9d
100755
(executable)
--- a/
src/jalview/appletgui/PaintRefresher.java
+++ b/
src/jalview/appletgui/PaintRefresher.java
@@
-18,6
+18,7
@@
package jalview.appletgui;
import java.util.*;
package jalview.appletgui;
import java.util.*;
+import java.util.List;
import java.awt.*;
import java.awt.*;
@@
-122,8
+123,8
@@
public class PaintRefresher
else if (validateSequences && comp instanceof AlignmentPanel
&& source instanceof AlignmentPanel)
{
else if (validateSequences && comp instanceof AlignmentPanel
&& source instanceof AlignmentPanel)
{
- validateSequences(((AlignmentPanel) source).av.alignment,
- ((AlignmentPanel) comp).av.alignment);
+ validateSequences(((AlignmentPanel) source).av.getAlignment(),
+ ((AlignmentPanel) comp).av.getAlignment());
}
if (comp instanceof AlignmentPanel && alignmentChanged)
}
if (comp instanceof AlignmentPanel && alignmentChanged)
@@
-183,7
+184,11
@@
public class PaintRefresher
{
if (i < comp.getHeight())
{
{
if (i < comp.getHeight())
{
- comp.getSequences().insertElementAt(a1[i], i);
+ // TODO: the following does not trigger any recalculation of height/etc, or maintain the dataset
+ List<SequenceI> alsq;
+ synchronized (alsq=comp.getSequences()) {
+ alsq.add(i, a1[i]);
+ }
}
else
{
}
else
{