import jalview.api.AlignViewportI;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceGroup;
import jalview.api.AlignViewportI;
import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceGroup;
import java.awt.event.MouseMotionListener;
import java.util.Enumeration;
import java.util.Hashtable;
import java.awt.event.MouseMotionListener;
import java.util.Enumeration;
import java.util.Hashtable;
}
public void drawNode(Graphics g, SequenceNode node, float chunk,
}
public void drawNode(Graphics g, SequenceNode node, float chunk,
- float scale, int width, int offx, int offy)
+ double scale, int width, int offx, int offy)
drawNode(g, (SequenceNode) node.right(), chunk, scale, width, offx,
offy);
drawNode(g, (SequenceNode) node.right(), chunk, scale, width, offx,
offy);
}
public void pickNode(Rectangle pickBox, SequenceNode node, float chunk,
}
public void pickNode(Rectangle pickBox, SequenceNode node, float chunk,
- float scale, int width, int offx, int offy)
+ double scale, int width, int offx, int offy)
setColor(tree.getTopNode(), Color.black);
av.setSelectionGroup(null);
setColor(tree.getTopNode(), Color.black);
av.setSelectionGroup(null);
{
Color col = new Color((int) (Math.random() * 255),
(int) (Math.random() * 255), (int) (Math.random() * 255));
{
Color col = new Color((int) (Math.random() * 255),
(int) (Math.random() * 255), (int) (Math.random() * 255));
// instead we set it manually - recalc called after updateAnnotation
sg.setColourScheme(cs);
sg.getGroupColourScheme().setThreshold(
// instead we set it manually - recalc called after updateAnnotation
sg.setColourScheme(cs);
sg.getGroupColourScheme().setThreshold(
av.isIgnoreGapsConsensus());
sg.setName("JTreeGroup:" + sg.hashCode());
sg.setIdColour(col);
if (av.getGlobalColourScheme() != null
av.isIgnoreGapsConsensus());
sg.setName("JTreeGroup:" + sg.hashCode());
sg.setIdColour(col);
if (av.getGlobalColourScheme() != null
{
Conservation c = new Conservation("Group", sg.getSequences(null),
sg.getStartRes(), sg.getEndRes());
{
Conservation c = new Conservation("Group", sg.getSequences(null),
sg.getStartRes(), sg.getEndRes());