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Alignment Annotation added
[jalview.git]
/
src
/
jalview
/
datamodel
/
AlignmentI.java
diff --git
a/src/jalview/datamodel/AlignmentI.java
b/src/jalview/datamodel/AlignmentI.java
index
182b687
..
b46a1a7
100755
(executable)
--- a/
src/jalview/datamodel/AlignmentI.java
+++ b/
src/jalview/datamodel/AlignmentI.java
@@
-1,6
+1,5
@@
package jalview.datamodel;
\r
\r
package jalview.datamodel;
\r
\r
-import jalview.jbgui.*;
\r
import java.util.*;
\r
\r
/** Data structure to hold and manipulate a multiple sequence alignment
\r
import java.util.*;
\r
\r
/** Data structure to hold and manipulate a multiple sequence alignment
\r
@@
-63,10
+62,15
@@
public interface AlignmentI {
public void sortByPID(SequenceI s) ;
\r
public void sortByID() ;
\r
\r
public void sortByPID(SequenceI s) ;
\r
public void sortByID() ;
\r
\r
+ //Annotations
\r
+ public void addAnnotation(AlignmentAnnotation aa);
\r
+ public void deleteAnnotation(AlignmentAnnotation aa);
\r
+ public AlignmentAnnotation [] getAlignmentAnnotation();
\r
+
\r
public void setGapCharacter(char gc);
\r
public char getGapCharacter();
\r
\r
public void setGapCharacter(char gc);
\r
public char getGapCharacter();
\r
\r
- public Vector getAAFrequency();
\r
+ public Vector getAAFrequency();
\r
}
\r
\r
\r
}
\r
\r
\r