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Merge branch 'develop' into trialMerge
[jalview.git]
/
src
/
jalview
/
datamodel
/
SequenceI.java
diff --git
a/src/jalview/datamodel/SequenceI.java
b/src/jalview/datamodel/SequenceI.java
index
5a3aafd
..
933f332
100755
(executable)
--- a/
src/jalview/datamodel/SequenceI.java
+++ b/
src/jalview/datamodel/SequenceI.java
@@
-114,9
+114,11
@@
public interface SequenceI extends ASequenceI
* get a range on the sequence as a string
*
* @param start
* get a range on the sequence as a string
*
* @param start
- * position relative to start of sequence including gaps (from 0)
+ * (inclusive) position relative to start of sequence including gaps
+ * (from 0)
* @param end
* @param end
- * position relative to start of sequence including gaps (from 0)
+ * (exclusive) position relative to start of sequence including gaps
+ * (from 0)
*
* @return String containing all gap and symbols in specified range
*/
*
* @return String containing all gap and symbols in specified range
*/
@@
-218,7
+220,7
@@
public interface SequenceI extends ASequenceI
* - last column, base 1
* @return
*/
* - last column, base 1
* @return
*/
- public Range findPositions(int fromColum, int toColumn);
+ public ContiguousI findPositions(int fromColum, int toColumn);
/**
* Returns an int array where indices correspond to each residue in the
/**
* Returns an int array where indices correspond to each residue in the