- /*
- * private void RNAPanelDemoInit() { DefaultListModel dlm = new
- * DefaultListModel();
- *
- *
- * int marginTools = 40;
- *
- * DefaultListSelectionModel m = new DefaultListSelectionModel();
- * m.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
- * m.setLeadAnchorNotificationEnabled(false);
- *
- *
- * _sideList = new ReorderableJList(); _sideList.setModel(dlm);
- * _sideList.addMouseListener(this); _sideList.setSelectionModel(m);
- * _sideList.setPreferredSize(new Dimension(100, 0));
- * _sideList.addListSelectionListener( new ListSelectionListener(){ public
- * void valueChanged(ListSelectionEvent arg0) { //System.out.println(arg0); if
- * (!_sideList.isSelectionEmpty() && !arg0.getValueIsAdjusting()) { FullBackup
- * sel = (FullBackup) _sideList.getSelectedValue(); Mapping map =
- * Mapping.DefaultOutermostMapping(vp.getRNA().getSize(), sel.rna.getSize());
- * vp.showRNAInterpolated(sel.rna,sel.config,map);
- * _seq.setText(sel.rna.getSeq()); _str.setText(sel.rna.getStructDBN()); } }
- * });
- *
- * _rnaList = new BackupHolder(dlm,_sideList); RNA _RNA1 = new
- * RNA("User defined 1"); RNA _RNA2 = new RNA("User defined 2"); try { vp =
- * new VARNAPanel("0","."); _RNA1.setRNA(DEFAULT_SEQUENCE,
- * DEFAULT_STRUCTURE1); _RNA1.drawRNARadiate(vp.getConfig());
- * _RNA2.setRNA(DEFAULT_SEQUENCE, DEFAULT_STRUCTURE2);
- * _RNA2.drawRNARadiate(vp.getConfig()); } catch (ExceptionNonEqualLength e) {
- * vp.errorDialog(e); } catch (ExceptionUnmatchedClosingParentheses e2) {
- * e2.printStackTrace(); } catch (ExceptionFileFormatOrSyntax e3) {
- * e3.printStackTrace(); } vp.setPreferredSize(new Dimension(400, 400));
- * _rnaList.add(vp.getConfig().clone(),_RNA2,generateDefaultName());
- * _rnaList.add(vp.getConfig().clone(),_RNA1,generateDefaultName(),true);
- *
- * JScrollPane listScroller = new JScrollPane(_sideList);
- * listScroller.setPreferredSize(new Dimension(150, 0));
- *
- * setBackground(_backgroundColor); vp.setBackground(_backgroundColor);
- *
- *
- * Font textFieldsFont = Font.decode("MonoSpaced-PLAIN-12");
- *
- * _seqLabel.setHorizontalTextPosition(JLabel.LEFT);
- * _seqLabel.setPreferredSize(new Dimension(marginTools, 15));
- * _seq.setFont(textFieldsFont); _seq.setText(DEFAULT_SEQUENCE);
- *
- * _createButton.addActionListener(new ActionListener() { public void
- * actionPerformed(ActionEvent e) { try { RNA nRNA = new
- * RNA(generateDefaultName()); nRNA.setRNA(_seq.getText(), _str.getText());
- * nRNA.drawRNARadiate(vp.getConfig()); _rnaList.add(new
- * VARNAConfig(),nRNA,true); } catch (ExceptionUnmatchedClosingParentheses e1)
- * { JOptionPane.showMessageDialog(vp, e1.getMessage(),"Error",
- * JOptionPane.ERROR_MESSAGE); } catch (ExceptionFileFormatOrSyntax e1) {
- * JOptionPane.showMessageDialog(vp, e1.getMessage(),"Error",
- * JOptionPane.ERROR_MESSAGE); } } });
- *
- *
- * _seqPanel.setLayout(new BorderLayout()); _seqPanel.add(_seqLabel,
- * BorderLayout.WEST); _seqPanel.add(_seq, BorderLayout.CENTER);
- *
- * _strLabel.setPreferredSize(new Dimension(marginTools, 15));
- * _strLabel.setHorizontalTextPosition(JLabel.LEFT);
- * _str.setFont(textFieldsFont); _strPanel.setLayout(new BorderLayout());
- * _strPanel.add(_strLabel, BorderLayout.WEST); _strPanel.add(_str,
- * BorderLayout.CENTER);
- *
- * _input.setLayout(new GridLayout(2, 0)); _input.add(_seqPanel);
- * _input.add(_strPanel);
- *
- * JPanel goPanel = new JPanel(); goPanel.setLayout(new BorderLayout());
- *
- * _tools.setLayout(new BorderLayout()); _tools.add(_input,
- * BorderLayout.CENTER); _tools.add(_info, BorderLayout.SOUTH);
- * _tools.add(goPanel, BorderLayout.EAST);
- *
- * _deleteButton.addActionListener(new ActionListener() { public void
- * actionPerformed(ActionEvent e) { _rnaList.removeSelected(); } });
- * _duplicateButton.addActionListener(new ActionListener() { public void
- * actionPerformed(ActionEvent e) {
- * _rnaList.add((VARNAConfig)vp.getConfig().clone
- * (),vp.getRNA().clone(),vp.getRNA
- * ().getName()+"-"+DateFormat.getTimeInstance(DateFormat.LONG).format(new
- * Date()),true); }});
- *
- * JPanel ops = new JPanel(); ops.setLayout(new GridLayout(1,2));
- * ops.add(_deleteButton); ops.add(_duplicateButton);
- *
- * JLabel j = new JLabel("Structures Manager",JLabel.CENTER);
- * _listPanel.setLayout(new BorderLayout());
- *
- * _listPanel.add(ops,BorderLayout.SOUTH);
- * _listPanel.add(j,BorderLayout.NORTH);
- * _listPanel.add(listScroller,BorderLayout.CENTER);
- *
- * goPanel.add(_createButton, BorderLayout.CENTER);
- *
- * JSplitPane split = new
- * JSplitPane(JSplitPane.HORIZONTAL_SPLIT,true,_listPanel,vp);
- * getContentPane().setLayout(new BorderLayout()); getContentPane().add(split,
- * BorderLayout.CENTER); getContentPane().add(_tools, BorderLayout.NORTH);
- *
- * setVisible(true); DropTarget dt = new DropTarget(vp, this);
- *
- * vp.addVARNAListener(this); }
- */