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JAL-3253 one global singleton instance of EnsemblInfo suffices
[jalview.git]
/
src
/
jalview
/
gui
/
CrossRefAction.java
diff --git
a/src/jalview/gui/CrossRefAction.java
b/src/jalview/gui/CrossRefAction.java
index
2d20ad9
..
d37cb29
100644
(file)
--- a/
src/jalview/gui/CrossRefAction.java
+++ b/
src/jalview/gui/CrossRefAction.java
@@
-141,7
+141,7
@@
public class CrossRefAction implements Runnable
*/
AlignFrame newFrame = new AlignFrame(xrefsAlignment,
AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
*/
AlignFrame newFrame = new AlignFrame(xrefsAlignment,
AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
- if (Cache.getDefault("HIDE_INTRONS", true))
+ if (Cache.getDefault(Preferences.HIDE_INTRONS, true))
{
newFrame.hideFeatureColumns(SequenceOntologyI.EXON, false);
}
{
newFrame.hideFeatureColumns(SequenceOntologyI.EXON, false);
}
@@
-276,7
+276,7
@@
public class CrossRefAction implements Runnable
return;
}
return;
}
- Set<String> ensemblDivisions = EnsemblInfo.getDivisions();
+ Set<String> ensemblDivisions = new EnsemblInfo().getDivisions();
/*
* first look for direct dbrefs from sequence to Ensembl
/*
* first look for direct dbrefs from sequence to Ensembl
@@
-440,7
+440,7
@@
public class CrossRefAction implements Runnable
* register any new mappings for sequence mouseover etc
* (will not duplicate any previously registered mappings)
*/
* register any new mappings for sequence mouseover etc
* (will not duplicate any previously registered mappings)
*/
- Desktop.getInstance().getStructureSelectionManager()
+ Desktop.getStructureSelectionManager()
.registerMappings(dataset.getCodonFrames());
if (copyAlignment.getHeight() <= 0)
.registerMappings(dataset.getCodonFrames());
if (copyAlignment.getHeight() <= 0)