- @Override
- public Color getResidueBoxColour(SequenceI seq, int i)
- {
- allGroups = av.getAlignment().findAllGroups(seq);
-
- if (inCurrentSequenceGroup(i))
- {
- if (currentSequenceGroup.getDisplayBoxes())
- {
- getBoxColour(currentSequenceGroup.cs, seq, i);
- }
- }
- else if (av.getShowBoxes())
- {
- getBoxColour(av.getGlobalColourScheme(), seq, i);
- }
-
- return resBoxColour;
- }
-