+ /**
+ * read an annotation file onto the alignment, but apply the given calcId
+ * @param aln
+ * @param calcId
+ * @param file
+ * @param url
+ * @return
+ */
+ public boolean readAnnotationFileWithCalcId(Alignment aln, String calcId, String file,
+ DataSourceType url)
+ {
+ defaultCalcId=calcId;
+ return readAnnotationFile(aln, null, file, url);
+ }
+