- clustalColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.clustalx"));
- clustalColour.setName(JalviewColourScheme.Clustal.toString());
- clustalColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- clustalColour_actionPerformed();
- }
- });
- zappoColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.zappo"));
- zappoColour.setName(JalviewColourScheme.Zappo.toString());
- zappoColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- zappoColour_actionPerformed();
- }
- });
- taylorColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.taylor"));
- taylorColour.setName(JalviewColourScheme.Taylor.toString());
- taylorColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- taylorColour_actionPerformed();
- }
- });
- hydrophobicityColour = new JRadioButtonMenuItem(
- MessageManager
- .getString("label.hydrophobicity"));
- hydrophobicityColour
- .setName(JalviewColourScheme.Hydrophobic.toString());
- hydrophobicityColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- hydrophobicityColour_actionPerformed();
- }
- });
- helixColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.helix_propensity"));
- helixColour.setName(JalviewColourScheme.Helix.toString());
- helixColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- helixColour_actionPerformed();
- }
- });
- strandColour = new JRadioButtonMenuItem(
- MessageManager
- .getString("label.strand_propensity"));
- strandColour.setName(JalviewColourScheme.Strand.toString());
- strandColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- strandColour_actionPerformed();
- }
- });
- turnColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.turn_propensity"));
- turnColour.setName(JalviewColourScheme.Turn.toString());
- turnColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- turnColour_actionPerformed();
- }
- });
- buriedColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.buried_index"));
- buriedColour.setName(JalviewColourScheme.Buried.toString());
- buriedColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- buriedColour_actionPerformed();
- }
- });
- userDefinedColour = new JRadioButtonMenuItem(
- MessageManager
- .getString("action.user_defined"));
- userDefinedColour.setName(JalviewColourScheme.UserDefined.toString());
- userDefinedColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- userDefinedColour_actionPerformed(e);
- }
- });
- PIDColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.percentage_identity"));
- PIDColour.setName(JalviewColourScheme.PID.toString());
- PIDColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- PIDColour_actionPerformed();
- }
- });
- BLOSUM62Colour = new JRadioButtonMenuItem(
- MessageManager.getString("label.blosum62_score"));
- BLOSUM62Colour.setName(JalviewColourScheme.Blosum62.toString());
- BLOSUM62Colour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- BLOSUM62Colour_actionPerformed();
- }
- });
- nucleotideColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.nucleotide"));
- nucleotideColour.setName(JalviewColourScheme.Nucleotide.toString());
- nucleotideColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- nucleotideColour_actionPerformed();
- }
- });
- purinePyrimidineColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.purine_pyrimidine"));
- purinePyrimidineColour.setName(JalviewColourScheme.PurinePyrimidine.toString());
- purinePyrimidineColour.addActionListener(new ActionListener()
- {
- @Override
- public void actionPerformed(ActionEvent e)
- {
- purinePyrimidineColour_actionPerformed();
- }
- });
-
- tcoffeeColour = new JRadioButtonMenuItem(
- MessageManager.getString("label.tcoffee_scores"));
- tcoffeeColour.setName(JalviewColourScheme.TCoffee.toString());
- tcoffeeColour.setEnabled(false);
- tcoffeeColour.addActionListener(new ActionListener()
- {
-
- @Override
- public void actionPerformed(ActionEvent e)
- {
- tcoffeeColorScheme_actionPerformed();
- }
- });
-
- // RNAInteractionColour = new JRadioButtonMenuItem("RNA Interaction type");
- // RNAInteractionColour.setName("RNA Interaction");
- // RNAInteractionColour.addActionListener(new ActionListener()
- // {
- // @Override
- // public void actionPerformed(ActionEvent e)
- // {
- // RNAInteractionColour_actionPerformed();
- // }
- // });
- /*
- * covariationColour = new JRadioButtonMenuItem("Covariation");
- * covariationColour.addActionListener(new ActionListener() { public void
- * actionPerformed(ActionEvent e) { covariationColour_actionPerformed(); }
- * });
- */