- JMenuBar menuBar = new JMenuBar();
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- JMenu fileMenu = new JMenu();
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- JMenu savemenu = new JMenu();
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- JMenuItem pdbFile = new JMenuItem();
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- JMenuItem png = new JMenuItem();
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- JMenuItem eps = new JMenuItem();
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- JMenuItem viewMapping = new JMenuItem();
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- protected JMenu viewMenu = new JMenu();
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- protected JMenu chainMenu = new JMenu();
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- JMenu jMenu1 = new JMenu();
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- protected JMenu colourMenu = new JMenu();
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- protected JMenu jmolActionMenu = new JMenu();
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- protected JMenuItem alignStructs = new JMenuItem();
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- JMenuItem backGround = new JMenuItem();
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- protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
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- protected JRadioButtonMenuItem jmolColour = new JRadioButtonMenuItem();
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- protected ButtonGroup colourButtons = new ButtonGroup();
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- JMenu helpMenu = new JMenu();